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proline-, glutamic acid/leucine-rich protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 839904, updated on 18-Sep-2024

Summary

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Official Full Name
proline-, glutamic acid/leucine-rich protein
Primary source
TAIR:AT1G30240
Locus tag
AT1G30240
See related
Araport:AT1G30240
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F12P21.4; F12P21_4
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Genomic context

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Location:
chromosome: 1
Exon count:
13
Sequence:
Chromosome: 1; NC_003070.9 (10641031..10646195, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene inositol transporter 2 Neighboring gene translation elongation factor EF1B/ribosomal protein S6 family protein Neighboring gene uncharacterized protein Neighboring gene galactosyltransferase family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001084159.2
NM_102763.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
proline-, glutamic acid/leucine-rich protein
NP_001077628.1
  • unknown protein; Has 169 Blast hits to 168 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 49; Fungi - 68; Plants - 46; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
NP_174315.2
  • FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); Has 165 Blast hits to 164 proteins in 73 species: Archae - 0; Bacteria - 0; Metazoa - 47; Fungi - 68; Plants - 46; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    10641031..10646195 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001084159.2 → NP_001077628.1  proline-, glutamic acid/leucine-rich protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001077628.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W5G9, Q0WV78
    Conserved Domains (1) summary
    pfam08167
    Location:16 → 225
    RIX1; rRNA processing/ribosome biogenesis

  2. NM_102763.3 → NP_174315.2  proline-, glutamic acid/leucine-rich protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_174315.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W5G9, A8MQA6
    Conserved Domains (1) summary
    pfam08167
    Location:16 → 225
    RIX1; rRNA processing/ribosome biogenesis
Nucleotide Protein
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