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RKF1 receptor-like kinase in flowers 1 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 839853, updated on 18-Sep-2024

Summary

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Official Symbol
RKF1
Official Full Name
receptor-like kinase in flowers 1
Primary source
TAIR:AT1G29750
Locus tag
AT1G29750
See related
Araport:AT1G29750
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F1N18.19; F1N18_19; receptor-like kinase in flowers 1; RECEPTOR-LIKE SERINE/THREONINE KINASE
Summary
Receptor-like serine/threonine kinase (RKF1). The putative extracellular domain of the RKF1 protein contains 13 tandem repeats of leucine-rich sequences. Expressed in early flower primordial, stamen, and pollen grains.
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Genomic context

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See RKF1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
24
Sequence:
Chromosome: 1; NC_003070.9 (10413853..10420774, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Leucine-rich repeat transmembrane protein kinase Neighboring gene Leucine-rich repeat transmembrane protein kinase Neighboring gene Putative adipose-regulatory protein (Seipin) Neighboring gene Haloacid dehalogenase-like hydrolase (HAD) superfamily protein Neighboring gene uncharacterized protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification by PCR of receptor-like protein kinases from Arabidopsis flowers. Takahashi T, et al. Plant Mol Biol, 1998 Jul. PMID 9687063
  2. An extracellular network of Arabidopsis leucine-rich repeat receptor kinases. Smakowska-Luzan E, et al. Nature, 2018 Jan 18. PMID 29320478, Free PMC Article
  3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001332873.1
NM_102715.8
NM_180624.6

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables kinase activity ISS
Inferred from Sequence or Structural Similarity
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein serine/threonine kinase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in plasma membrane ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
receptor-like kinase in flowers 1
NP_174268.7
  • receptor-like kinase in flowers 1 (RKF1); FUNCTIONS IN: protein serine/threonine kinase activity, receptor signaling protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Malectin/receptor-like protein kinase (InterPro:IPR021720), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat transmembrane protein kinase (TAIR:AT3G14840.2); Has 173330 Blast hits to 127712 proteins in 4547 species: Archae - 123; Bacteria - 16375; Metazoa - 48014; Fungi - 10256; Plants - 77963; Viruses - 389; Other Eukaryotes - 20210 (source: NCBI BLink).
NP_850955.5
  • receptor-like kinase in flowers 1 (RKF1); FUNCTIONS IN: protein serine/threonine kinase activity, receptor signaling protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Malectin/receptor-like protein kinase (InterPro:IPR021720); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat transmembrane protein kinase (TAIR:AT3G14840.2); Has 173202 Blast hits to 127607 proteins in 4540 species: Archae - 123; Bacteria - 16384; Metazoa - 47938; Fungi - 10258; Plants - 77889; Viruses - 389; Other Eukaryotes - 20221 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    10413853..10420774 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_180624.6 → NP_850955.5  receptor-like kinase in flowers 1 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_850955.5

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W6G1
    Conserved Domains (5) summary
    smart00221
    Location:671 → 937
    STYKc; Protein kinase; unclassified specificity
    COG4886
    Location:97 → 380
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    cd14066
    Location:672 → 940
    STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
    sd00033
    Location:110 → 132
    LRR_RI; leucine-rich repeat [structural motif]
    pfam11721
    Location:402 → 589
    Malectin; Di-glucose binding within endoplasmic reticulum

  2. NM_001332873.1 → NP_001322311.1  receptor-like kinase in flowers 1 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W4R0, A0A1P8ATN8

  3. NM_102715.8 → NP_174268.7  receptor-like kinase in flowers 1 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_174268.7

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O22579, Q8RWZ9, Q9C6G6, Q9FXF2
    UniProtKB/TrEMBL
    A0A178W4R0
    Conserved Domains (5) summary
    smart00221
    Location:686 → 952
    STYKc; Protein kinase; unclassified specificity
    COG4886
    Location:112 → 395
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    cd14066
    Location:687 → 955
    STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
    sd00033
    Location:125 → 147
    LRR_RI; leucine-rich repeat [structural motif]
    pfam11721
    Location:417 → 604
    Malectin; Di-glucose binding within endoplasmic reticulum
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FXF2.1

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