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Leucine-rich repeat transmembrane protein kinase [ Arabidopsis thaliana (thale cress) ]

Gene ID: 839850, updated on 18-Sep-2024

Summary

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Official Full Name
Leucine-rich repeat transmembrane protein kinase
Primary source
TAIR:AT1G29720
Locus tag
AT1G29720
See related
Araport:AT1G29720
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
CELLULOSE SYNTHASE LIKE D2; CLSD2; T3M22.6; T3M22_6
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Genomic context

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Location:
chromosome: 1
Exon count:
25
Sequence:
Chromosome: 1; NC_003070.9 (10393659..10399873, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene miscRNA Neighboring gene Leucine-rich repeat transmembrane protein kinase Neighboring gene Leucine-rich repeat transmembrane protein kinase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. An extracellular network of Arabidopsis leucine-rich repeat receptor kinases. Smakowska-Luzan E, et al. Nature, 2018 Jan 18. PMID 29320478, Free PMC Article
  2. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
  3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within phosphorylation ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
located_in plasma membrane ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Leucine-rich repeat transmembrane protein kinase
NP_564335.3
  • Leucine-rich repeat transmembrane protein kinase; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Malectin/receptor-like protein kinase (InterPro:IPR021720), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat transmembrane protein kinase (TAIR:AT1G29740.1); Has 108967 Blast hits to 107923 proteins in 3166 species: Archae - 87; Bacteria - 12310; Metazoa - 39616; Fungi - 9390; Plants - 31491; Viruses - 414; Other Eukaryotes - 15659 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    10393659..10399873 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_102712.4 → NP_564335.3  Leucine-rich repeat transmembrane protein kinase [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564335.3

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9ASQ6, Q9C6G3, Q9FXE9
    UniProtKB/TrEMBL
    A0A654EFM1
    Conserved Domains (5) summary
    smart00221
    Location:678 → 942
    STYKc; Protein kinase; unclassified specificity
    COG4886
    Location:144 → 365
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    cd14066
    Location:679 → 944
    STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
    sd00033
    Location:120 → 143
    LRR_RI; leucine-rich repeat [structural motif]
    pfam11721
    Location:407 → 593
    Malectin; Di-glucose binding within endoplasmic reticulum
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9ASQ6.3

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