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Papain family cysteine protease [ Arabidopsis thaliana (thale cress) ]

Gene ID: 839783, updated on 18-Sep-2024

Summary

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Official Full Name
Papain family cysteine protease
Primary source
TAIR:AT1G29080
Locus tag
AT1G29080
See related
Araport:AT1G29080
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F28N24.27; F28N24_27
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Genomic context

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Location:
chromosome: 1
Exon count:
2
Sequence:
Chromosome: 1; NC_003070.9 (10157494..10158805, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene pseudo Neighboring gene Cysteine proteinases superfamily protein Neighboring gene Heavy metal transport/detoxification superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by TAIR

Process Evidence Code Pubs
acts_upstream_of_or_within proteolysis ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Papain family cysteine protease
NP_564320.1
  • Papain family cysteine protease; FUNCTIONS IN: cysteine-type endopeptidase activity, cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT1G29090.1); Has 7819 Blast hits to 7758 proteins in 724 species: Archae - 63; Bacteria - 249; Metazoa - 3289; Fungi - 4; Plants - 1890; Viruses - 133; Other Eukaryotes - 2191 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    10157494..10158805 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_102649.2 → NP_564320.1  Papain family cysteine protease [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564320.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9W911, A0A654EDP3, Q9LP39
    Conserved Domains (3) summary
    PTZ00203
    Location:4 → 328
    PTZ00203; cathepsin L protease; Provisional
    smart00848
    Location:39 → 95
    Inhibitor_I29; Cathepsin propeptide inhibitor domain (I29)
    pfam00112
    Location:135 → 345
    Peptidase_C1; Papain family cysteine protease
Nucleotide Protein
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