U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

NUDX15 nudix hydrolase homolog 15 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 839773, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
NUDX15
Official Full Name
nudix hydrolase homolog 15
Primary source
TAIR:AT1G28960
Locus tag
AT1G28960
See related
Araport:AT1G28960
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15; ATNUDT15; ATNUDX15; F1K23.5; F1K23_5; nudix hydrolase homolog 15
Summary
Encodes a ppGpp pyrophosphohydrolase.
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See NUDX15 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
5
Sequence:
Chromosome: 1; NC_003070.9 (10109500..10111738, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene tRNA-Pro Neighboring gene tRNA-Pro Neighboring gene Heavy metal transport/detoxification superfamily protein Neighboring gene reverse transcriptase zinc-binding protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. A comparative analysis of the molecular characteristics of the Arabidopsis CoA pyrophosphohydrolases AtNUDX11, 15, and 15a. Ito D, et al. Biosci Biotechnol Biochem, 2012. PMID 22232253
  2. Enzymatic and molecular characterization of Arabidopsis ppGpp pyrophosphohydrolase, AtNUDX26. Ito D, et al. Biosci Biotechnol Biochem, 2012. PMID 23221701
  3. Molecular characterization of organelle-type Nudix hydrolases in Arabidopsis. Ogawa T, et al. Plant Physiol, 2008 Nov. PMID 18815383, Free PMC Article
  4. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article
  5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. comparative studies of the gene regulation, the kinetic parameters, and the intracellular localization of AtNUDX11, 15, and 15a
    Title: A comparative analysis of the molecular characteristics of the Arabidopsis CoA pyrophosphohydrolases AtNUDX11, 15, and 15a.
Submit: New GeneRIF Correction

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help
NM_001036027.2
NM_102640.3
NM_179394.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables coenzyme A diphosphatase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within coenzyme A biosynthetic process IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within nucleoside phosphate metabolic process IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within succinyl-CoA metabolic process IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
nudix hydrolase homolog 15
NP_001031104.1
  • nudix hydrolase homolog 15 (NUDX15); CONTAINS InterPro DOMAIN/s: NUDIX hydrolase domain-like (InterPro:IPR015797), NUDIX hydrolase domain (InterPro:IPR000086), NUDIX hydrolase, AtNUDT22 (InterPro:IPR017397); BEST Arabidopsis thaliana protein match is: nudix hydrolase homolog 22 (TAIR:AT2G33980.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_564316.1
  • nudix hydrolase homolog 15 (NUDX15); CONTAINS InterPro DOMAIN/s: NUDIX hydrolase domain-like (InterPro:IPR015797), NUDIX hydrolase domain (InterPro:IPR000086), NUDIX hydrolase, AtNUDT22 (InterPro:IPR017397); BEST Arabidopsis thaliana protein match is: nudix hydrolase homolog 22 (TAIR:AT2G33980.1); Has 3635 Blast hits to 3634 proteins in 1300 species: Archae - 59; Bacteria - 2277; Metazoa - 167; Fungi - 181; Plants - 103; Viruses - 0; Other Eukaryotes - 848 (source: NCBI BLink).
NP_849725.2
  • nudix hydrolase homolog 15 (NUDX15); CONTAINS InterPro DOMAIN/s: NUDIX hydrolase domain-like (InterPro:IPR015797), NUDIX hydrolase domain (InterPro:IPR000086), NUDIX hydrolase, AtNUDT22 (InterPro:IPR017397); BEST Arabidopsis thaliana protein match is: nudix hydrolase homolog 22 (TAIR:AT2G33980.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    10109500..10111738 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_179393.4 → NP_849724.1  nudix hydrolase homolog 15 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_849724.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q0WKX6, Q3E701, Q3E702, Q67YK3, Q8GYB1, Q9SHQ7
    UniProtKB/TrEMBL
    A0A5S9WB78
    Conserved Domains (1) summary
    cl00447
    Location:97 → 280
    Nudix_Hydrolase; Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ ...

  2. NM_001332826.1 → NP_001320887.1  nudix hydrolase homolog 15 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q0WKX6, Q3E701, Q3E702, Q67YK3, Q8GYB1, Q9SHQ7
    UniProtKB/TrEMBL
    A0A5S9WB78
    Conserved Domains (1) summary
    cl00447
    Location:97 → 280
    Nudix_Hydrolase; Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ ...

  3. NM_001036027.2 → NP_001031104.1  nudix hydrolase homolog 15 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031104.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WAX9, A0A5S9WB78
    Conserved Domains (1) summary
    cl00447
    Location:97 → 280
    Nudix_Hydrolase; Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ ...

  4. NM_102640.3 → NP_564316.1  nudix hydrolase homolog 15 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564316.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WAX9, A0A5S9WB78
    Conserved Domains (1) summary
    cl00447
    Location:97 → 280
    Nudix_Hydrolase; Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ ...

  5. NM_179394.3 → NP_849725.2  nudix hydrolase homolog 15 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_849725.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WAX9, A0A5S9WB78
    Conserved Domains (1) summary
    cl00447
    Location:97 → 280
    Nudix_Hydrolase; Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ ...
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8GYB1.2

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools