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Nucleotidylyl transferase superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 839731, updated on 18-Sep-2024

Summary

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Official Full Name
Nucleotidylyl transferase superfamily protein
Primary source
TAIR:AT1G28350
Locus tag
AT1G28350
See related
Araport:AT1G28350
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F3M18.22; F3M18_22
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Genomic context

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Location:
chromosome: 1
Exon count:
23
Sequence:
Chromosome: 1; NC_003070.9 (9943737..9949835)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene ncRNA Neighboring gene receptor like protein 4 Neighboring gene ERF domain protein 12 Neighboring gene ERF domain protein 11

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001332810.1
NM_001332811.1
NM_102601.6

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables tyrosine-tRNA ligase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in tRNA aminoacylation for protein translation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Nucleotidylyl transferase superfamily protein
NP_001319097.1
  • Nucleotidylyl transferase superfamily protein; FUNCTIONS IN: tyrosine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding; INVOLVED IN: translation, tyrosyl-tRNA aminoacylation, tRNA aminoacylation for protein translation; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Tyrosyl-tRNA synthetase, class Ib, archaeal/eukaryotic cytosolic (InterPro:IPR015624), Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial (InterPro:IPR002307), Aminoacyl-tRNA synthetase, class Ib (InterPro:IPR002305); BEST Arabidopsis thaliana protein match is: Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial (TAIR:AT2G33840.1); Has 6761 Blast hits to 4745 proteins in 1539 species: Archae - 718; Bacteria - 3084; Metazoa - 577; Fungi - 521; Plants - 241; Viruses - 10; Other Eukaryotes - 1610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    9943737..9949835
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001332810.1 → NP_001319097.1  Nucleotidylyl transferase superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4HWL4, Q9SGN2
    UniProtKB/TrEMBL
    A0A178W822, A0A5S9W9C8, A0A654EF35

  2. NM_102601.6 → NP_174157.4  Nucleotidylyl transferase superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_174157.4

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4HWL4, Q9SGN2
    UniProtKB/TrEMBL
    A0A178W822, A0A5S9W9C8, A0A654EF35
    Conserved Domains (2) summary
    PTZ00348
    Location:25 → 717
    PTZ00348; tyrosyl-tRNA synthetase; Provisional
    cl00015
    Location:377 → 748
    nt_trans; nucleotidyl transferase superfamily

  3. NM_001332811.1 → NP_001320714.1  Nucleotidylyl transferase superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W822, A0A1P8ANP3, A0A5S9W9C8, A0A654EF35
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
F4HWL4.1

Gene LinkOut

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