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strawberry notch protein (DUF616) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 839718, updated on 18-Sep-2024

Summary

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Official Full Name
strawberry notch protein (DUF616)
Primary source
TAIR:AT1G28240
Locus tag
AT1G28240
See related
Araport:AT1G28240
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F3H9.11; F3H9_11
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Genomic context

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Location:
chromosome: 1
Exon count:
9
Sequence:
Chromosome: 1; NC_003070.9 (9868257..9872278, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene purine permease 3 Neighboring gene purine permease 1 Neighboring gene uncharacterized protein Neighboring gene Telomerase activating protein Est1 Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification of Key Enzymes for Pectin Synthesis in Seed Mucilage. Voiniciuc C, et al. Plant Physiol, 2018 Nov. PMID 30228108, Free PMC Article
  2. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
  3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_102589.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables glycosyltransferase activity IGI
Inferred from Genetic Interaction
more info
 PubMed 
enables glycosyltransferase activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
enables glycosyltransferase activity ISM
Inferred from Sequence Model
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within mucilage extrusion from seed coat IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within mucilage pectin biosynthetic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within rhamnogalacturonan I biosynthetic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in xylan metabolic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
strawberry notch protein (DUF616)
NP_174145.1
  • Protein of unknown function (DUF616); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF616 (InterPro:IPR006852); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF616) (TAIR:AT1G53040.2); Has 322 Blast hits to 322 proteins in 41 species: Archae - 14; Bacteria - 34; Metazoa - 0; Fungi - 4; Plants - 225; Viruses - 1; Other Eukaryotes - 44 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    9868257..9872278 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_102589.4 → NP_174145.1  strawberry notch protein (DUF616) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_174145.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8W4K7, Q9FZ97
    UniProtKB/TrEMBL
    A0A5S9W8N3, A0A654EEG6, A0A7G2DW92
    Conserved Domains (1) summary
    pfam04765
    Location:206 → 508
    DUF616; Protein of unknown function (DUF616)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FZ97.1

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