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RUN/FYVE domain protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 839678, updated on 18-Sep-2024

Summary

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Official Full Name
RUN/FYVE domain protein
Primary source
TAIR:AT1G27850
Locus tag
AT1G27850
See related
Araport:AT1G27850
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F28L5.11; F28L5_11
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Genomic context

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Location:
chromosome: 1
Exon count:
7
Sequence:
Chromosome: 1; NC_003070.9 (9698298..9703944)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Polynucleotidyl transferase, ribonuclease H-like superfamily protein Neighboring gene Transducin/WD40 repeat-like superfamily protein Neighboring gene hypothetical protein (DUF626) Neighboring gene Polynucleotidyl transferase, ribonuclease H-like superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Basic Proline-Rich Protein-Mediated Microtubules Are Essential for Lobe Growth and Flattened Cell Geometry. Wong JH, et al. Plant Physiol, 2019 Dec. PMID 31601644, Free PMC Article
  2. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article
  3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_102550.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within anisotropic cell growth IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within cortical microtubule organization IGI
Inferred from Genetic Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in cortical microtubule IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
RUN/FYVE domain protein
NP_174106.1
  • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40070.1); Has 9215 Blast hits to 5316 proteins in 473 species: Archae - 6; Bacteria - 773; Metazoa - 3392; Fungi - 1710; Plants - 539; Viruses - 143; Other Eukaryotes - 2652 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    9698298..9703944
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_102550.4 → NP_174106.1  RUN/FYVE domain protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_174106.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654EIK6, A0A7G2DTM2, Q9C6N3
    Conserved Domains (1) summary
    PHA03307
    Location:73 → 292
    PHA03307; transcriptional regulator ICP4; Provisional
Nucleotide Protein
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