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GYF domain-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 839633, updated on 18-Sep-2024

Summary

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Official Full Name
GYF domain-containing protein
Primary source
TAIR:AT1G27430
Locus tag
AT1G27430
See related
Araport:AT1G27430
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F17L21.22; F17L21_22
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Genomic context

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Location:
chromosome: 1
Exon count:
10
Sequence:
Chromosome: 1; NC_003070.9 (9520825..9527280, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene DNA repair metallo-beta-lactamase family protein Neighboring gene Galactose oxidase/kelch repeat superfamily protein Neighboring gene uncharacterized protein Neighboring gene Exostosin family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Substrates related to chromatin and to RNA-dependent processes are modified by Arabidopsis SUMO isoforms that differ in a conserved residue with influence on desumoylation. Budhiraja R, et al. Plant Physiol, 2009 Mar. PMID 19151129, Free PMC Article
  2. Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase. Van Leene J, et al. Nat Plants, 2019 Mar. PMID 30833711
  3. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article
  4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001332760.1
NM_001332761.1
NM_102506.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
GYF domain-containing protein
NP_174063.4
  • GYF domain-containing protein; CONTAINS InterPro DOMAIN/s: GYF (InterPro:IPR003169); BEST Arabidopsis thaliana protein match is: GYF domain-containing protein (TAIR:AT1G24300.1); Has 16615 Blast hits to 9086 proteins in 533 species: Archae - 0; Bacteria - 846; Metazoa - 6412; Fungi - 1516; Plants - 946; Viruses - 78; Other Eukaryotes - 6817 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    9520825..9527280 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_102506.5 → NP_174063.4  GYF domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_174063.4

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9W2N9, F4HSW8
    Conserved Domains (1) summary
    smart00444
    Location:477 → 532
    GYF; Contains conserved Gly-Tyr-Phe residues

  2. NM_001332760.1 → NP_001322661.1  GYF domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AUP7, Q9FZJ2

  3. NM_001332761.1 → NP_001322662.1  GYF domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AUP4, Q9FZJ2
Nucleotide Protein
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