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valyl-tRNA synthetase / valine-tRNA ligase-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 839605, updated on 18-Sep-2024

Summary

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Official Full Name
valyl-tRNA synthetase / valine-tRNA ligase-like protein
Primary source
TAIR:AT1G27160
Locus tag
AT1G27160
See related
Araport:AT1G27160
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T7N9.22; T7N9_22
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Genomic context

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Location:
chromosome: 1
Exon count:
1
Sequence:
Chromosome: 1; NC_003070.9 (9432418..9433190)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene glutathione S-transferase tau 14 Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene transmembrane receptors / ATP binding protein Neighboring gene disease resistance protein (TIR-NBS-LRR class)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables valine-tRNA ligase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in valyl-tRNA aminoacylation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
valyl-tRNA synthetase / valine-tRNA ligase-like protein
NP_174036.1
  • valyl-tRNA synthetase / valine--tRNA ligase-related; FUNCTIONS IN: valine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding; INVOLVED IN: translation, valyl-tRNA aminoacylation, tRNA aminoacylation for protein translation; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Valyl-tRNA synthetase, class Ia (InterPro:IPR002303), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding (InterPro:IPR013155), Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (InterPro:IPR009080); BEST Arabidopsis thaliana protein match is: valyl-tRNA synthetase / valine--tRNA ligase (VALRS) (TAIR:AT1G14610.1); Has 7044 Blast hits to 7043 proteins in 2564 species: Archae - 124; Bacteria - 5116; Metazoa - 229; Fungi - 143; Plants - 103; Viruses - 0; Other Eukaryotes - 1329 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    9432418..9433190
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_102478.1 → NP_174036.1  valyl-tRNA synthetase / valine-tRNA ligase-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_174036.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4HR51, Q9LFX2
    Conserved Domains (1) summary
    pfam08264
    Location:5 → 125
    Anticodon_1; Anticodon-binding domain of tRNA
Nucleotide Protein
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