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rRNA-processing EFG1-like protein (DUF2361) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 839575, updated on 18-Sep-2024

Summary

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Official Full Name
rRNA-processing EFG1-like protein (DUF2361)
Primary source
TAIR:AT1G04230
Locus tag
AT1G04230
See related
Araport:AT1G04230
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 1
Exon count:
8
Sequence:
Chromosome: 1; NC_003070.9 (1125515..1128788)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Leucine-rich repeat protein kinase family protein Neighboring gene ncRNA Neighboring gene 3-ketoacyl-CoA synthase 2 Neighboring gene AUX/IAA transcriptional regulator family protein Neighboring gene ncRNA Neighboring gene AUX/IAA transcriptional regulator family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_001331469.1
NM_100304.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in rRNA processing IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
rRNA-processing EFG1-like protein (DUF2361)
NP_171919.3
  • Protein of unknown function (DUF2361); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2361 (InterPro:IPR019310); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF2361) (TAIR:AT5G43720.1); Has 1174 Blast hits to 818 proteins in 194 species: Archae - 0; Bacteria - 26; Metazoa - 566; Fungi - 310; Plants - 87; Viruses - 6; Other Eukaryotes - 179 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    1125515..1128788
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_100304.5 → NP_171919.3  rRNA-processing EFG1-like protein (DUF2361) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_171919.3

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W126, A0A5S9SIP0, A0A654E8Q3, Q94K10
    Conserved Domains (1) summary
    pfam10153
    Location:38 → 150
    Efg1; rRNA-processing protein Efg1

  2. NM_001331469.1 → NP_001320736.1  rRNA-processing EFG1-like protein (DUF2361) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8ANS3, A0A5S9SIP0, A0A654E8Q3
Nucleotide Protein
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