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GATL5 galacturonosyltransferase 5 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 839475, updated on 18-Sep-2024

Summary

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Official Symbol
GATL5
Official Full Name
galacturonosyltransferase 5
Primary source
TAIR:AT1G02720
Locus tag
AT1G02720
See related
Araport:AT1G02720
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AtGATL5; galacturonosyltransferase 5; galacturonosyltransferase-like 5; T14P4.1; T14P4_1
Summary
Encodes a protein with putative galacturonosyltransferase activity.
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Genomic context

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See GATL5 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
2
Sequence:
Chromosome: 1; NC_003070.9 (591682..594264)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene GATA transcription factor-like protein Neighboring gene uncharacterized protein Neighboring gene glycine-rich protein Neighboring gene cellulose synthase-like D5 Neighboring gene MRG family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. GALACTURONOSYLTRANSFERASE-LIKE5 is involved in the production of Arabidopsis seed coat mucilage. Kong Y, et al. Plant Physiol, 2013 Nov. PMID 24092888, Free PMC Article
  2. The plant glycosyltransferase clone collection for functional genomics. Lao J, et al. Plant J, 2014 Aug. PMID 24905498
  3. Functional identification of an Arabidopsis pectin biosynthetic homogalacturonan galacturonosyltransferase. Sterling JD, et al. Proc Natl Acad Sci U S A, 2006 Mar 28. PMID 16540543, Free PMC Article
  4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_100152.3
NM_202015.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables polygalacturonate 4-alpha-galacturonosyltransferase activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within mucilage biosynthetic process involved in seed coat development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within mucilage pectin metabolic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in pectin biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within plant-type cell wall assembly IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in Golgi apparatus ISM
Inferred from Sequence Model
more info
  
located_in endoplasmic reticulum IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
galacturonosyltransferase 5
NP_171772.1
  • galacturonosyltransferase 5 (GATL5); FUNCTIONS IN: transferase activity, transferring hexosyl groups, polygalacturonate 4-alpha-galacturonosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: galacturonosyltransferase 6 (TAIR:AT4G02130.3); Has 2014 Blast hits to 2000 proteins in 469 species: Archae - 0; Bacteria - 946; Metazoa - 269; Fungi - 2; Plants - 729; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).
NP_973744.1
  • galacturonosyltransferase 5 (GATL5); FUNCTIONS IN: transferase activity, transferring hexosyl groups, polygalacturonate 4-alpha-galacturonosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: galacturonosyltransferase 6 (TAIR:AT4G02130.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    591682..594264
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_100152.3 → NP_171772.1  galacturonosyltransferase 5 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_171772.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FWY9
    UniProtKB/TrEMBL
    A0A7G2DRD8, W8Q7E9
    Conserved Domains (1) summary
    pfam01501
    Location:82 → 340
    Glyco_transf_8; Glycosyl transferase family 8

  2. NM_202015.2 → NP_973744.1  galacturonosyltransferase 5 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_973744.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FWY9
    UniProtKB/TrEMBL
    A0A7G2DRD8, W8Q7E9
    Conserved Domains (1) summary
    pfam01501
    Location:82 → 340
    Glyco_transf_8; Glycosyl transferase family 8
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FWY9.1

Gene LinkOut

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