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Ypt/Rab-GAP domain of gyp1p superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 839404, updated on 18-Sep-2024

Summary

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Official Full Name
Ypt/Rab-GAP domain of gyp1p superfamily protein
Primary source
TAIR:AT1G04830
Locus tag
AT1G04830
See related
Araport:AT1G04830
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F13M7.18; F13M7_18
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Genomic context

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Location:
chromosome: 1
Exon count:
10
Sequence:
Chromosome: 1; NC_003070.9 (1358574..1362019, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit Neighboring gene tubulin alpha-4 chain Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene ubiquitin-associated (UBA)/TS-N domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_001331502.1
NM_100361.4

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Ypt/Rab-GAP domain of gyp1p superfamily protein
NP_001184908.1
  • Ypt/Rab-GAP domain of gyp1p superfamily protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: Ypt/Rab-GAP domain of gyp1p superfamily protein (TAIR:AT4G13730.1).
NP_171975.2
  • Ypt/Rab-GAP domain of gyp1p superfamily protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: Ypt/Rab-GAP domain of gyp1p superfamily protein (TAIR:AT4G13730.1); Has 3724 Blast hits to 3613 proteins in 228 species: Archae - 0; Bacteria - 2; Metazoa - 1821; Fungi - 641; Plants - 593; Viruses - 0; Other Eukaryotes - 667 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    1358574..1362019 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001197979.1 → NP_001184908.1  Ypt/Rab-GAP domain of gyp1p superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001184908.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2DNH1, F4I5T4
    Conserved Domains (1) summary
    pfam00566
    Location:225 → 413
    RabGAP-TBC; Rab-GTPase-TBC domain

  2. NM_100361.4 → NP_171975.2  Ypt/Rab-GAP domain of gyp1p superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_171975.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WL94, A0A7G2DNH1, Q84K76
    Conserved Domains (1) summary
    smart00164
    Location:215 → 413
    TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs

  3. NM_001331502.1 → NP_001323239.1  Ypt/Rab-GAP domain of gyp1p superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AWI2, A0A7G2DNH1
Nucleotide Protein
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