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PGA4 polygalacturonase 4 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 839391, updated on 18-Sep-2024

Summary

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Official Symbol
PGA4
Official Full Name
polygalacturonase 4
Primary source
TAIR:AT1G02790
Locus tag
AT1G02790
See related
Araport:AT1G02790
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
POLYGALACTURONASE; polygalacturonase 4; T14P4.31
Summary
encodes a exopolygalacturonase.
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Genomic context

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See PGA4 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
4
Sequence:
Chromosome: 1; NC_003070.9 (610363..612324, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Ribosomal protein L19e family protein Neighboring gene cellulase 2 Neighboring gene Plant invertase/pectin methylesterase inhibitor superfamily

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

NM_100158.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables galacturan 1,4-alpha-galacturonidase activity IEA
Inferred from Electronic Annotation
more info
  
enables polygalacturonase activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
polygalacturonase 4
NP_171778.1
  • polygalacturonase 4 (PGA4); FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT3G07830.1); Has 4155 Blast hits to 4140 proteins in 501 species: Archae - 6; Bacteria - 1251; Metazoa - 14; Fungi - 1275; Plants - 1482; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    610363..612324 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_100158.3 → NP_171778.1  polygalacturonase 4 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_171778.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P49062
    UniProtKB/TrEMBL
    A0A178WH12, A0A5S9SAP9
    Conserved Domains (1) summary
    cl19188
    Location:21 → 421
    PL-6; Polysaccharide Lyase Family 6
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P49062.1

Gene LinkOut

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