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NAC005 NAC domain containing protein 5 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 839390, updated on 18-Sep-2024

Summary

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Official Symbol
NAC005
Official Full Name
NAC domain containing protein 5
Primary source
TAIR:AT1G02250
Locus tag
AT1G02250
See related
Araport:AT1G02250
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
anac005; NAC domain containing protein 5; T6A9.20
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Genomic context

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See NAC005 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
6
Sequence:
Chromosome: 1; NC_003070.9 (437860..439559, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene NAC domain containing protein 4 Neighboring gene Divalent ion symporter Neighboring gene Calcium-binding endonuclease/exonuclease/phosphatase family

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. ANAC005 is a membrane-associated transcription factor and regulates vascular development in Arabidopsis. Zhao J, et al. J Integr Plant Biol, 2016 May. PMID 26178734, Free PMC Article
  2. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
  3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. ANAC005 is a cell membrane-associated transcription factor that inhibits xylem tissue development in Arabidopsis.
    Title: ANAC005 is a membrane-associated transcription factor and regulates vascular development in Arabidopsis.
Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within xylem development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
NAC domain containing protein 5
NP_171727.2
  • NAC domain containing protein 5 (NAC005); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: xylem; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 4 (TAIR:AT1G02230.1); Has 2682 Blast hits to 2674 proteins in 69 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2682; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    437860..439559 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_100105.3 → NP_171727.2  NAC domain containing protein 5 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_171727.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    C0SUS2, O81914
    UniProtKB/TrEMBL
    A0A178W508, A0A654E876
    Conserved Domains (1) summary
    pfam02365
    Location:5 → 132
    NAM; No apical meristem (NAM) protein
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O81914.2

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