UBA-like domain protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Full Name: UBA-like domain protein
Primary source: TAIR:AT1G05040
Locus tag: AT1G05040
See related: Araport:AT1G05040
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: T7A14.9; T7A14_9
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Genomic context

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See in Genome Data Viewer

Location:: chromosome: 1

Exon count:: 4

Sequence:: Chromosome: 1; NC_003070.9 (1447369..1448463, complement)

Chromosome 1 - NC_003070.9 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Homology

Orthologs from OrthoDB

NM_001123756.1

Supported by ESTs:

NM_100383.3

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
involved_in biological_process	ND No biological Data available more info

Component	Evidence Code	Pubs
located_in nucleus	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: UBA-like domain protein

NP_001117228.1

unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, flower; EXPRESSED DURING: 4 anthesis; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NP_171997.1

BEST Arabidopsis thaliana protein match is: Ubiquitin-associated (UBA) protein (TAIR:AT2G33010.1); Has 14 Blast hits to 12 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003070.9 Reference assembly

Range

1447369..1448463 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_100383.3 → NP_171997.1 UBA-like domain protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_171997.1

Status: REVIEWED

UniProtKB/TrEMBL

A0A5S9SNC4, A0ME56, Q9ZVN8

Conserved Domains (1) summary

cd14273
Location:11 → 41

UBA_TAP-C_like; UBA-like domain found in the NXF family of mRNA nuclear export factors and similar proteins
NM_001123756.1 → NP_001117228.1 UBA-like domain protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_001117228.1

Status: REVIEWED

UniProtKB/TrEMBL

A0A178WKK2, B3H6T5

Conserved Domains (2) summary

cd14273
Location:11 → 41

UBA_TAP-C_like; UBA-like domain found in the NXF family of mRNA nuclear export factors and similar proteins

pfam03028
Location:5 → 88

Dynein_heavy; Dynein heavy chain and region D6 of dynein motor