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EDA10 SEC7-like guanine nucleotide exchange family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 839301, updated on 18-Sep-2024

Summary

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Official Symbol
EDA10
Official Full Name
SEC7-like guanine nucleotide exchange family protein
Primary source
TAIR:AT1G01960
Locus tag
AT1G01960
See related
Araport:AT1G01960
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
embryo sac development arrest 10; F22M8.9; F22M8_9
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Genomic context

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See EDA10 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
11
Sequence:
Chromosome: 1; NC_003070.9 (330588..337912, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene SET domain-containing protein Neighboring gene zinc finger protein-like protein Neighboring gene Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein Neighboring gene armadillo repeat kinesin 2 Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene FAD-binding Berberine family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Delivery of endocytosed proteins to the cell-division plane requires change of pathway from recycling to secretion. Richter S, et al. Elife, 2014 Apr 8. PMID 24714496, Free PMC Article
  2. Involvement of BIG5 and BIG3 in BRI1 Trafficking Reveals Diverse Functions of BIG-subfamily ARF-GEFs in Plant Growth and Gravitropism. Xue S, et al. Int J Mol Sci, 2019 May 11. PMID 31083521, Free PMC Article
  3. Genetic and molecular identification of genes required for female gametophyte development and function in Arabidopsis. Pagnussat GC, et al. Development, 2005 Feb. PMID 15634699
  4. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article
  5. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. BIG5 functions redundantly with BIG3 in plant growth and gravitropism, and BIG5 participates in Brassinosteroid signal transduction pathway through regulating BRI1 trafficking.[BIG3]
    Title: Involvement of BIG5 and BIG3 in BRI1 Trafficking Reveals Diverse Functions of BIG-subfamily ARF-GEFs in Plant Growth and Gravitropism.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_100076.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within megagametogenesis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in regulation of ARF protein signal transduction IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within vesicle-mediated transport IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol HDA PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in trans-Golgi network membrane IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
SEC7-like guanine nucleotide exchange family protein
NP_171698.1
  • embryo sac development arrest 10 (EDA10); FUNCTIONS IN: binding, ARF guanyl-nucleotide exchange factor activity, guanyl-nucleotide exchange factor activity; INVOLVED IN: megagametogenesis; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SEC7-like (InterPro:IPR000904), Armadillo-type fold (InterPro:IPR016024), Protein of unknown function DUF1981, SEC7 associated (InterPro:IPR015403); BEST Arabidopsis thaliana protein match is: SEC7-like guanine nucleotide exchange family protein (TAIR:AT3G60860.1); Has 2904 Blast hits to 2648 proteins in 246 species: Archae - 0; Bacteria - 34; Metazoa - 1480; Fungi - 646; Plants - 300; Viruses - 0; Other Eukaryotes - 444 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    330588..337912 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_100076.3 → NP_171698.1  SEC7-like guanine nucleotide exchange family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_171698.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LPC5
    UniProtKB/TrEMBL
    A0A178WBT3, A0A5S9S5T0, A0A654E6E9, A0A7G2DRR7
    Conserved Domains (1) summary
    PLN03076
    Location:1 → 1749
    PLN03076; ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LPC5.1

Gene LinkOut

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