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FAD-binding Berberine family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 839296, updated on 18-Sep-2024

Summary

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Official Full Name
FAD-binding Berberine family protein
Primary source
TAIR:AT1G01980
Locus tag
AT1G01980
See related
Araport:AT1G01980
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F22M8.11; F22M8_11; SEC1A; SIMILAR TO ELECTRON CAREER 1A
Summary
member of Reticuline oxidase-like family
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Genomic context

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Location:
chromosome: 1
Exon count:
1
Sequence:
Chromosome: 1; NC_003070.9 (340108..342040, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene armadillo repeat kinesin 2 Neighboring gene SEC7-like guanine nucleotide exchange family protein Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene uncharacterized protein Neighboring gene UDP-D-glucuronate 4-epimerase 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Four Arabidopsis berberine bridge enzyme-like proteins are specific oxidases that inactivate the elicitor-active oligogalacturonides. Benedetti M, et al. Plant J, 2018 Apr. PMID 29396998
  2. A new picture of cell wall protein dynamics in elongating cells of Arabidopsis thaliana: confirmed actors and newcomers. Irshad M, et al. BMC Plant Biol, 2008 Sep 16. PMID 18796151, Free PMC Article
  3. Isolation and proteomic characterization of the Arabidopsis Golgi defines functional and novel components involved in plant cell wall biosynthesis. Parsons HT, et al. Plant Physiol, 2012 May. PMID 22430844, Free PMC Article
  4. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
  5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_100078.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables FAD binding IEA
Inferred from Electronic Annotation
more info
  
enables oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus HDA PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in plant-type cell wall IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane HDA PubMed 

General protein information

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Preferred Names
FAD-binding Berberine family protein
NP_171700.1
  • ATSEC1A; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding Berberine family protein (TAIR:AT1G11770.1); Has 4204 Blast hits to 4007 proteins in 589 species: Archae - 34; Bacteria - 1730; Metazoa - 0; Fungi - 1606; Plants - 712; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    340108..342040 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_100078.3 → NP_171700.1  FAD-binding Berberine family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_171700.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q56ZK2, Q9LPC3
    UniProtKB/TrEMBL
    A0A178WKZ1, A0A5S9S5D3, A0A654E606
    Conserved Domains (3) summary
    pfam08031
    Location:475 → 532
    BBE; Berberine and berberine like
    cl19922
    Location:80 → 222
    FAD_binding_4; FAD binding domain
    cl40730
    Location:51 → 534
    GlcD; FAD/FMN-containing dehydrogenase [Energy production and conversion]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LPC3.1

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