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PUB54 plant U-box 54 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 839251, updated on 18-Sep-2024

Summary

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Official Symbol
PUB54
Official Full Name
plant U-box 54
Primary source
TAIR:AT1G01680
Locus tag
AT1G01680
See related
Araport:AT1G01680
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATPUB54; plant U-box 54; PLANT U-BOX 54; T1N6.5; T1N6_5
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Genomic context

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See PUB54 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
7
Sequence:
Chromosome: 1; NC_003070.9 (246262..248440, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene RING/U-box superfamily protein Neighboring gene RING/U-box superfamily protein Neighboring gene putative recombination initiation defects 3 Neighboring gene Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-like protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_100050.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ubiquitin-protein transferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
plant U-box 54
NP_171674.2
  • plant U-box 54 (PUB54); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: response to stress, protein ubiquitination; LOCATED IN: ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), U box domain (InterPro:IPR003613); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G01660.1); Has 2251 Blast hits to 2122 proteins in 140 species: Archae - 0; Bacteria - 22; Metazoa - 203; Fungi - 25; Plants - 1809; Viruses - 3; Other Eukaryotes - 189 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    246262..248440 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_100050.4 → NP_171674.2  plant U-box 54 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_171674.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LQ92
    UniProtKB/TrEMBL
    A0A178WFK8, A0A654E5X9
    Conserved Domains (2) summary
    cd01989
    Location:5 → 153
    STK_N; The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein ...
    cd16655
    Location:237 → 278
    RING-Ubox_WDSUB1_like; U-box domain, a modified RING finger, found in WD repeat, SAM and U-box domain-containing protein 1 (WDSUB1) and similar proteins
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LQ92.1

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