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transcription regulator [ Arabidopsis thaliana (thale cress) ]

Gene ID: 839244, updated on 18-Sep-2024

Summary

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Official Full Name
transcription regulator
Primary source
TAIR:AT1G02080
Locus tag
AT1G02080
See related
Araport:AT1G02080
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T7I23.15; T7I23_15
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Genomic context

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Location:
chromosome: 1
Exon count:
50
Sequence:
Chromosome: 1; NC_003070.9 (373335..386913)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene squamosa promoter binding protein-like 8 Neighboring gene zinc ion-binding protein Neighboring gene Proteasome component (PCI) domain protein Neighboring gene Leucine carboxyl methyltransferase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The CCR4-NOT complex component NOT1 regulates RNA-directed DNA methylation and transcriptional silencing by facilitating Pol IV-dependent siRNA production. Zhou HR, et al. Plant J, 2020 Aug. PMID 32412137
  2. AtNOT1 is required for gametophyte development in Arabidopsis. Pereira PA, et al. Plant J, 2020 Aug. PMID 32369648
  3. AtNOT1 Is a Novel Regulator of Gene Expression during Pollen Development. Motomura K, et al. Plant Cell Physiol, 2020 Apr 1. PMID 31879778
  4. Identification of Arabidopsis CCR4-NOT Complexes with Pumilio RNA-Binding Proteins, APUM5 and APUM2. Arae T, et al. Plant Cell Physiol, 2019 Sep 1. PMID 31093672
  5. Protein and metabolite composition of Arabidopsis stress granules. Kosmacz M, et al. New Phytol, 2019 May. PMID 30664249

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The CCR4-NOT complex component NOT1 regulates RNA-directed DNA methylation and transcriptional silencing by facilitating Pol IV-dependent siRNA production.
    Title: The CCR4-NOT complex component NOT1 regulates RNA-directed DNA methylation and transcriptional silencing by facilitating Pol IV-dependent siRNA production.
  2. AtNOT1 is required for gametophyte development in Arabidopsis.
    Title: AtNOT1 is required for gametophyte development in Arabidopsis.
  3. AtNOT1 Is a Novel Regulator of Gene Expression during Pollen Development.
    Title: AtNOT1 Is a Novel Regulator of Gene Expression during Pollen Development.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001197960.2
NM_001331324.1
NM_100088.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of translation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of CCR4-NOT core complex IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasmic stress granule IDA
Inferred from Direct Assay
more info
 PubMed 
located_in extracellular region HDA PubMed 

General protein information

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Preferred Names
transcription regulator
NP_001184889.1
  • transcription regulators; FUNCTIONS IN: transcription regulator activity; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: CCR4-Not complex component, Not1 (InterPro:IPR007196).
NP_171710.4
  • transcription regulators; FUNCTIONS IN: transcription regulator activity; LOCATED IN: membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: CCR4-Not complex component, Not1 (InterPro:IPR007196); Has 1434 Blast hits to 680 proteins in 246 species: Archae - 0; Bacteria - 196; Metazoa - 419; Fungi - 362; Plants - 144; Viruses - 0; Other Eukaryotes - 313 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    373335..386913
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_100088.5 → NP_171710.4  transcription regulator [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_171710.4

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WMT9, F4HVV6
    Conserved Domains (5) summary
    pfam04054
    Location:2048 → 2403
    Not1; CCR4-Not complex component, Not1
    pfam12842
    Location:1343 → 1483
    DUF3819; Domain of unknown function (DUF3819)
    pfam16415
    Location:995 → 1218
    CNOT1_CAF1_bind; CCR4-NOT transcription complex subunit 1 CAF1-binding domain
    pfam16417
    Location:700 → 877
    CNOT1_TTP_bind; CCR4-NOT transcription complex subunit 1 TTP binding domain
    pfam16418
    Location:527 → 674
    CNOT1_HEAT; CCR4-NOT transcription complex subunit 1 HEAT repeat

  2. NM_001197960.2 → NP_001184889.1  transcription regulator [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001184889.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WMT9, F4HVV7
    Conserved Domains (5) summary
    pfam04054
    Location:1994 → 2349
    Not1; CCR4-Not complex component, Not1
    pfam12842
    Location:1289 → 1429
    DUF3819; Domain of unknown function (DUF3819)
    pfam16415
    Location:941 → 1164
    CNOT1_CAF1_bind; CCR4-NOT transcription complex subunit 1 CAF1-binding domain
    pfam16417
    Location:646 → 823
    CNOT1_TTP_bind; CCR4-NOT transcription complex subunit 1 TTP binding domain
    pfam16418
    Location:473 → 620
    CNOT1_HEAT; CCR4-NOT transcription complex subunit 1 HEAT repeat

  3. NM_001331324.1 → NP_001321578.1  transcription regulator [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WMX0, A0A1P8ARB7
Nucleotide Protein
Heading Accession and Version

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