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SDG35 SET domain protein 35 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 839217, updated on 18-Sep-2024

Summary

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Official Symbol
SDG35
Official Full Name
SET domain protein 35
Primary source
TAIR:AT1G26760
Locus tag
AT1G26760
See related
Araport:AT1G26760
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATXR1; SET domain protein 35; T24P13.14; T24P13_14
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Genomic context

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See SDG35 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
1
Sequence:
Chromosome: 1; NC_003070.9 (9248152..9249943, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Ribosomal L32p protein family Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene Arabinanase/levansucrase/invertase Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_102439.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
SET domain protein 35
NP_173998.2
  • SET domain protein 35 (SDG35); FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: SET domain group 37 (TAIR:AT2G17900.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    9248152..9249943 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_102439.3 → NP_173998.2  SET domain protein 35 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_173998.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WP70, A0A654ED33, F4HPB8
    Conserved Domains (3) summary
    sd00006
    Location:73 → 103
    TPR; TPR repeat [structural motif]
    cd20071
    Location:325 → 401
    SET_SMYD; SET domain (including SET domain and post-SET domain) found in SET and MYND domain-containing protein, and similar proteins
    pfam00856
    Location:199 → 375
    SET; SET domain
Nucleotide Protein
Heading Accession and Version

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