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PIN domain-like family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 839193, updated on 18-Sep-2024

Summary

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Official Full Name
PIN domain-like family protein
Primary source
TAIR:AT1G26530
Locus tag
AT1G26530
See related
Araport:AT1G26530
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T1K7.10; T1K7_10
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Genomic context

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Location:
chromosome: 1
Exon count:
9
Sequence:
Chromosome: 1; NC_003070.9 (9165360..9167570)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene F-box associated ubiquitination effector family protein Neighboring gene F-box and associated interaction domains-containing protein Neighboring gene Cobalamin biosynthesis CobW-like protein Neighboring gene Agenet domain-containing protein Neighboring gene FKBP-like peptidyl-prolyl cis-trans isomerase family protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_102415.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  
part_of small-subunit processome IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
PIN domain-like family protein
NP_173975.4
  • PIN domain-like family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF652 (InterPro:IPR006984); BEST Arabidopsis thaliana protein match is: PIN domain-like family protein (TAIR:AT2G46230.1); Has 517 Blast hits to 517 proteins in 211 species: Archae - 4; Bacteria - 0; Metazoa - 206; Fungi - 155; Plants - 64; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    9165360..9167570
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_102415.5 → NP_173975.4  PIN domain-like family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_173975.4

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9VYP7, A0A654ED56, F4HP91
    Conserved Domains (1) summary
    cl14812
    Location:51 → 167
    PIN_SF; PIN (PilT N terminus) domain: Superfamily
Nucleotide Protein
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