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Cobalamin biosynthesis CobW-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 839192, updated on 18-Sep-2024

Summary

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Official Full Name
Cobalamin biosynthesis CobW-like protein
Primary source
TAIR:AT1G26520
Locus tag
AT1G26520
See related
Araport:AT1G26520
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T1K7.11; T1K7_11
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Genomic context

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Location:
chromosome: 1
Exon count:
9
Sequence:
Chromosome: 1; NC_003070.9 (9163211..9165900, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene F-box associated ubiquitination effector family protein Neighboring gene F-box and associated interaction domains-containing protein Neighboring gene PIN domain-like family protein Neighboring gene Agenet domain-containing protein Neighboring gene FKBP-like peptidyl-prolyl cis-trans isomerase family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Two related families of metal transferases, ZNG1 and ZNG2, are involved in acclimation to poor Zn nutrition in Arabidopsis. Zhang L, et al. Front Plant Sci, 2023. PMID 37965006, Free PMC Article
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_102414.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables zinc chaperone activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
involved_in response to zinc ion starvation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
is_active_in cytosol IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Cobalamin biosynthesis CobW-like protein
NP_173974.3
  • Cobalamin biosynthesis CobW-like protein; CONTAINS InterPro DOMAIN/s: Cobalamin (vitamin B12) biosynthesis CobW-like (InterPro:IPR003495), Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal (InterPro:IPR011629); BEST Arabidopsis thaliana protein match is: Cobalamin biosynthesis CobW-like protein (TAIR:AT1G15730.1); Has 8517 Blast hits to 8427 proteins in 1716 species: Archae - 88; Bacteria - 6047; Metazoa - 151; Fungi - 280; Plants - 232; Viruses - 0; Other Eukaryotes - 1719 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    9163211..9165900 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_102414.4 → NP_173974.3  Cobalamin biosynthesis CobW-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_173974.3

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W5Z2, A0A7G2DY75, Q500W8
    Conserved Domains (1) summary
    COG0523
    Location:44 → 372
    YejR; GTPase, G3E family [General function prediction only]
Nucleotide Protein
Heading Accession and Version

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