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FAD-binding Berberine family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 839181, updated on 18-Sep-2024

Summary

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Official Full Name
FAD-binding Berberine family protein
Primary source
TAIR:AT1G26390
Locus tag
AT1G26390
See related
Araport:AT1G26390
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T1K7.23; T1K7_23
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Genomic context

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Location:
chromosome: 1
Exon count:
1
Sequence:
Chromosome: 1; NC_003070.9 (9130013..9131779, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene RNA helicase family protein Neighboring gene FAD-binding Berberine family protein Neighboring gene FAD-binding Berberine family protein Neighboring gene FAD-binding Berberine family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_102403.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables FAD binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in plant-type cell wall ISS
Inferred from Sequence or Structural Similarity
more info
  

General protein information

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Preferred Names
FAD-binding Berberine family protein
NP_564245.1
  • FAD-binding Berberine family protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, LP.02 two leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding Berberine family protein (TAIR:AT1G26420.1); Has 4431 Blast hits to 4295 proteins in 635 species: Archae - 59; Bacteria - 1880; Metazoa - 8; Fungi - 1648; Plants - 659; Viruses - 0; Other Eukaryotes - 177 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    9130013..9131779 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_102403.3 → NP_564245.1  FAD-binding Berberine family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564245.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q949N1, Q9FZC5
    UniProtKB/TrEMBL
    A0A178W6S2, A0A5S9VY27
    Conserved Domains (3) summary
    COG0277
    Location:78 → 527
    GlcD; FAD/FMN-containing dehydrogenase [Energy production and conversion]
    pfam01565
    Location:78 → 214
    FAD_binding_4; FAD binding domain
    pfam08031
    Location:468 → 525
    BBE; Berberine and berberine like
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FZC5.1

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