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BSD domain-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 839171, updated on 18-Sep-2024

Summary

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Official Full Name
BSD domain-containing protein
Primary source
TAIR:AT1G26300
Locus tag
AT1G26300
See related
Araport:AT1G26300
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F28B23.4; F28B23_4
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Genomic context

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Location:
chromosome: 1
Exon count:
6
Sequence:
Chromosome: 1; NC_003070.9 (9095768..9099766, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene cryptochrome-interacting basic-helix-loop-helix 5 Neighboring gene Phosphatidylinositol 3- and 4-kinase family protein Neighboring gene uncharacterized protein Neighboring gene K-box region and MADS-box transcription factor family protein Neighboring gene Zinc-binding dehydrogenase family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001332710.1
NM_102394.3
NM_202185.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
BSD domain-containing protein
NP_001319084.1
  • BSD domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BSD (InterPro:IPR005607); BEST Arabidopsis thaliana protein match is: BSD domain-containing protein (TAIR:AT1G69030.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_173954.2
  • BSD domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BSD (InterPro:IPR005607); BEST Arabidopsis thaliana protein match is: BSD domain-containing protein (TAIR:AT1G69030.1); Has 242 Blast hits to 239 proteins in 42 species: Archae - 4; Bacteria - 13; Metazoa - 9; Fungi - 4; Plants - 182; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    9095768..9099766 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_102394.3 → NP_173954.2  BSD domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_173954.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W0L8, A0A5S9W0M2, Q67YP2, Q941A9
    Conserved Domains (1) summary
    smart00751
    Location:162 → 210
    BSD; domain in transcription factors and synapse-associated proteins

  2. NM_001332710.1 → NP_001319084.1  BSD domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W1T1, F4IE56

  3. NM_202185.2 → NP_973914.1  BSD domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_973914.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W1T1, F4IE56
    Conserved Domains (1) summary
    smart00751
    Location:162 → 210
    BSD; domain in transcription factors and synapse-associated proteins
Nucleotide Protein
Heading Accession and Version

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