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Metal-dependent phosphohydrolase [ Arabidopsis thaliana (thale cress) ]

Gene ID: 839157, updated on 18-Sep-2024

Summary

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Official Full Name
Metal-dependent phosphohydrolase
Primary source
TAIR:AT1G26160
Locus tag
AT1G26160
See related
Araport:AT1G26160
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F28B23.16; F28B23_16
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Genomic context

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Location:
chromosome: 1
Exon count:
8
Sequence:
Chromosome: 1; NC_003070.9 (9044422..9047049, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein Neighboring gene uncharacterized protein Neighboring gene proline-rich extensin-like receptor kinase 10 Neighboring gene ARM repeat superfamily protein Neighboring gene uncharacterized protein Neighboring gene Phosphoribulokinase / Uridine kinase family

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
  2. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
  3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001332689.1
NM_102381.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables 5'-deoxynucleotidase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chloroplast HDA PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Metal-dependent phosphohydrolase
NP_564240.1
  • Metal-dependent phosphohydrolase; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Metal-dependent phosphohydrolase, HD subdomain (InterPro:IPR006674), Metal-dependent phosphohydrolase, HD domain (InterPro:IPR003607); BEST Arabidopsis thaliana protein match is: Metal-dependent phosphohydrolase (TAIR:AT2G23820.2); Has 1552 Blast hits to 1531 proteins in 690 species: Archae - 126; Bacteria - 959; Metazoa - 120; Fungi - 153; Plants - 73; Viruses - 0; Other Eukaryotes - 121 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    9044422..9047049 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_102381.3 → NP_564240.1  Metal-dependent phosphohydrolase [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564240.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WK68, A0A5S9VYD3, Q93ZV1
    Conserved Domains (1) summary
    pfam13023
    Location:84 → 239
    HD_3; HD domain

  2. NM_001332689.1 → NP_001320747.1  Metal-dependent phosphohydrolase [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8ANS1
Nucleotide Protein
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