U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

coiled-coil protein (DUF572) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 839146, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Full Name
coiled-coil protein (DUF572)
Primary source
TAIR:AT1G25682
Locus tag
AT1G25682
See related
Araport:AT1G25682
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F14G11.11; F14G11_11
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 1
Exon count:
6
Sequence:
Chromosome: 1; NC_003070.9 (9002285..9004762, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Di-glucose binding protein with Leucine-rich repeat domain-containing protein Neighboring gene NAC (No Apical Meristem) domain transcriptional regulator superfamily protein Neighboring gene pseudo Neighboring gene pseudo

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

NM_102370.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
coiled-coil protein (DUF572)
NP_173930.1
  • Family of unknown function (DUF572); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cotyledon; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF572 (InterPro:IPR007590); BEST Arabidopsis thaliana protein match is: Family of unknown function (DUF572) (TAIR:AT1G25988.1); Has 717 Blast hits to 715 proteins in 213 species: Archae - 0; Bacteria - 6; Metazoa - 235; Fungi - 232; Plants - 115; Viruses - 0; Other Eukaryotes - 129 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    9002285..9004762 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001332684.1 → NP_001322477.1  coiled-coil protein (DUF572) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W244, A0A5S9VZT3, Q9C609
    Conserved Domains (1) summary
    pfam04502
    Location:13 → 307
    DUF572; Family of unknown function (DUF572)

  2. NM_102370.4 → NP_173930.1  coiled-coil protein (DUF572) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_173930.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W244, A0A5S9VZT3, Q9C609
    Conserved Domains (1) summary
    pfam04502
    Location:13 → 307
    DUF572; Family of unknown function (DUF572)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools