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Uncharacterized protein family (UPF0016) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 839138, updated on 18-Sep-2024

Summary

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Official Full Name
Uncharacterized protein family (UPF0016)
Primary source
TAIR:AT1G25520
Locus tag
AT1G25520
See related
Araport:AT1G25520
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F2J7.20; F2J7_20
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Genomic context

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Location:
chromosome: 1
Exon count:
13
Sequence:
Chromosome: 1; NC_003070.9 (8962087..8964564)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Plasma-membrane choline transporter family protein Neighboring gene Eukaryotic aspartyl protease family protein Neighboring gene Transmembrane amino acid transporter family protein Neighboring gene phytochrome and flowering time regulatory protein (PFT1) Neighboring gene myb-like transcription factor family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Homologous Proteins of the Manganese Transporter PAM71 Are Localized in the Golgi Apparatus and Endoplasmic Reticulum. Hoecker N, et al. Plants (Basel), 2020 Feb 13. PMID 32069796, Free PMC Article
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_102363.4

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in endoplasmic reticulum IDA
Inferred from Direct Assay
more info
 PubMed 
located_in root hair IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
Uncharacterized protein family (UPF0016)
NP_173923.1
  • Uncharacterized protein family (UPF0016); INVOLVED IN: response to karrikin; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0016 (InterPro:IPR001727); BEST Arabidopsis thaliana protein match is: Uncharacterized protein family (UPF0016) (TAIR:AT1G68650.1); Has 1806 Blast hits to 1733 proteins in 669 species: Archae - 27; Bacteria - 1021; Metazoa - 159; Fungi - 140; Plants - 210; Viruses - 0; Other Eukaryotes - 249 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    8962087..8964564
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_102363.4 → NP_173923.1  Uncharacterized protein family (UPF0016) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_173923.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8LA33, Q9C6M1
    UniProtKB/TrEMBL
    A0A178WM18, A0A5S9VXZ3, A0A7G2DY25
    Conserved Domains (1) summary
    COG2119
    Location:5 → 230
    Gdt1; Putative Ca2+/H+ antiporter, TMEM165/GDT1 family [General function prediction only]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9C6M1.1

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