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IPT6 isopentenyltransferase 6 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 839127, updated on 18-Sep-2024

Summary

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Official Symbol
IPT6
Official Full Name
isopentenyltransferase 6
Primary source
TAIR:AT1G25410
Locus tag
AT1G25410
See related
Araport:AT1G25410
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 6; ATIPT6; F2J7.12; F2J7_12; isopentenyltransferase 6
Summary
AB061404 Arabidopsis thaliana AtIPT6 mRNA for cytokinin synthase, complete cds
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Genomic context

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See IPT6 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
1
Sequence:
Chromosome: 1; NC_003070.9 (8914191..8915219, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene uncharacterized protein Neighboring gene Regulator of Vps4 activity in the MVB pathway protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Roles of Arabidopsis ATP/ADP isopentenyltransferases and tRNA isopentenyltransferases in cytokinin biosynthesis. Miyawaki K, et al. Proc Natl Acad Sci U S A, 2006 Oct 31. PMID 17062755, Free PMC Article
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_102352.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ATP/ADP dimethylallyltransferase activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within cytokinin biosynthetic process IGI
Inferred from Genetic Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
isopentenyltransferase 6
NP_173912.1
  • isopentenyltransferase 6 (IPT6); CONTAINS InterPro DOMAIN/s: tRNA isopentenyltransferase (InterPro:IPR002627); BEST Arabidopsis thaliana protein match is: isopentenyltransferase 1 (TAIR:AT1G68460.1); Has 7248 Blast hits to 7187 proteins in 2504 species: Archae - 0; Bacteria - 4974; Metazoa - 135; Fungi - 135; Plants - 290; Viruses - 0; Other Eukaryotes - 1714 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    8914191..8915219 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_102352.1 → NP_173912.1  isopentenyltransferase 6 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_173912.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9C6L1
    UniProtKB/TrEMBL
    A0A178WEI0, A0A5S9VVN3
    Conserved Domains (1) summary
    PLN02165
    Location:1 → 342
    PLN02165; adenylate isopentenyltransferase
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9C6L1.1

Gene LinkOut

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