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ARM repeat superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 839049, updated on 18-Sep-2024

Summary

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Official Full Name
ARM repeat superfamily protein
Primary source
TAIR:AT1G24330
Locus tag
AT1G24330
See related
Araport:AT1G24330
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F3I6.27; F3I6_27
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Genomic context

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Location:
chromosome: 1
Exon count:
7
Sequence:
Chromosome: 1; NC_003070.9 (8631206..8635055)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene GYF domain-containing protein Neighboring gene nuclear pore complex protein Neighboring gene Six-hairpin glycosidases superfamily protein Neighboring gene FAD/NAD(P)-binding oxidoreductase family protein Neighboring gene Acid phosphatase/vanadium-dependent haloperoxidase-related protein Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_102279.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ubiquitin-protein transferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chloroplast HDA PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
ARM repeat superfamily protein
NP_173843.2
  • ARM repeat superfamily protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: protein ubiquitination; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G67530.2); Has 3064 Blast hits to 2955 proteins in 242 species: Archae - 0; Bacteria - 60; Metazoa - 394; Fungi - 149; Plants - 2167; Viruses - 3; Other Eukaryotes - 291 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    8631206..8635055
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001332646.1 → NP_001323390.1  ARM repeat superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O48700
    UniProtKB/TrEMBL
    A0A5S9VSD0

  2. NM_102279.4 → NP_173843.2  ARM repeat superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_173843.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O48700
    UniProtKB/TrEMBL
    A0A5S9VSD0
    Conserved Domains (3) summary
    smart00504
    Location:278 → 341
    Ubox; Modified RING finger domain
    cd00020
    Location:611 → 685
    ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
    sd00043
    Location:628 → 664
    ARM; armadillo repeat [structural motif]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O48700.2

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