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Six-hairpin glycosidases superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 839048, updated on 18-Sep-2024

Summary

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Official Full Name
Six-hairpin glycosidases superfamily protein
Primary source
TAIR:AT1G24320
Locus tag
AT1G24320
See related
Araport:AT1G24320
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F3I6.26; F3I6_26
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Genomic context

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Location:
chromosome: 1
Exon count:
20
Sequence:
Chromosome: 1; NC_003070.9 (8626315..8631027, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene AAA-type ATPase family protein Neighboring gene ncRNA Neighboring gene GYF domain-containing protein Neighboring gene nuclear pore complex protein Neighboring gene ARM repeat superfamily protein Neighboring gene FAD/NAD(P)-binding oxidoreductase family protein Neighboring gene Acid phosphatase/vanadium-dependent haloperoxidase-related protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_001332645.1
NM_102278.6

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables Glc3Man9GlcNAc2 oligosaccharide glucosidase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in oligosaccharide metabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Six-hairpin glycosidases superfamily protein
NP_173842.2
  • Six-hairpin glycosidases superfamily protein; FUNCTIONS IN: mannosyl-oligosaccharide glucosidase activity, alpha-glucosidase activity, catalytic activity; INVOLVED IN: oligosaccharide metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 63 (InterPro:IPR004888), Six-hairpin glycosidase-like (InterPro:IPR008928); BEST Arabidopsis thaliana protein match is: glucosidase 1 (TAIR:AT1G67490.1); Has 471 Blast hits to 459 proteins in 200 species: Archae - 2; Bacteria - 99; Metazoa - 113; Fungi - 132; Plants - 45; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    8626315..8631027 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_102278.6 → NP_173842.2  Six-hairpin glycosidases superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_173842.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O48699, Q84M89
    UniProtKB/TrEMBL
    A0A178W935, A0A5S9VV69, A0A7G2DZ72
    Conserved Domains (2) summary
    pfam03200
    Location:285 → 784
    Glyco_hydro_63; Glycosyl hydrolase family 63 C-terminal domain
    pfam16923
    Location:46 → 200
    Glyco_hydro_63N; Glycosyl hydrolase family 63 N-terminal domain

  2. NM_001332645.1 → NP_001321649.1  Six-hairpin glycosidases superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8ARK2, A0A654ECQ4
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q84M89.1

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