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Paired amphipathic helix (PAH2) superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 839039, updated on 18-Sep-2024

Summary

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Official Full Name
Paired amphipathic helix (PAH2) superfamily protein
Primary source
TAIR:AT1G24250
Locus tag
AT1G24250
See related
Araport:AT1G24250
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F3I6.18; F3I6_18
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Genomic context

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Location:
chromosome: 1
Exon count:
5
Sequence:
Chromosome: 1; NC_003070.9 (8588295..8589546, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Paired amphipathic helix (PAH2) superfamily protein Neighboring gene Ribosomal protein L19 family protein Neighboring gene uncharacterized protein Neighboring gene K-box region and MADS-box transcription factor family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables transcription corepressor activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Paired amphipathic helix (PAH2) superfamily protein
NP_173835.1
  • Paired amphipathic helix (PAH2) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: Paired amphipathic helix (PAH2) superfamily protein (TAIR:AT1G23810.1); Has 951 Blast hits to 563 proteins in 154 species: Archae - 0; Bacteria - 0; Metazoa - 365; Fungi - 221; Plants - 322; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    8588295..8589546 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_102271.2 → NP_173835.1  Paired amphipathic helix (PAH2) superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_173835.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    O48692
    Conserved Domains (1) summary
    pfam02671
    Location:137 → 181
    PAH; Paired amphipathic helix repeat
Nucleotide Protein
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