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hypothetical protein (DUF626) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 839006, updated on 18-Sep-2024

Summary

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Official Full Name
hypothetical protein (DUF626)
Primary source
TAIR:AT1G23950
Locus tag
AT1G23950
See related
Araport:AT1G23950
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T23E23.13; T23E23_13
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Genomic context

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Location:
chromosome: 1
Exon count:
6
Sequence:
Chromosome: 1; NC_003070.9 (8469533..8471417, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene pseudo Neighboring gene apoptosis inhibitory protein Neighboring gene hypothetical protein (DUF626) Neighboring gene transcription factor

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_001036008.2
NM_001084122.1
NM_102242.3
NM_202175.3
NM_202176.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
hypothetical protein (DUF626)
NP_001031085.2
  • Protein of unknown function (DUF626); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626, Arabidopsis thaliana (InterPro:IPR006462); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF626) (TAIR:AT1G23970.2); Has 109 Blast hits to 108 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 109; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
NP_001077591.1
  • Protein of unknown function (DUF626); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626, Arabidopsis thaliana (InterPro:IPR006462); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF626) (TAIR:AT1G23970.2); Has 199 Blast hits to 198 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 199; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
NP_564210.2
  • Protein of unknown function (DUF626); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626, Arabidopsis thaliana (InterPro:IPR006462); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF626) (TAIR:AT1G23970.2); Has 156 Blast hits to 155 proteins in 3 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 154; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
NP_973904.1
  • Protein of unknown function (DUF626); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626, Arabidopsis thaliana (InterPro:IPR006462); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF626) (TAIR:AT1G23970.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_973905.1
  • Protein of unknown function (DUF626); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626, Arabidopsis thaliana (InterPro:IPR006462); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF626) (TAIR:AT1G23970.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    8469533..8471417 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_202175.3 → NP_973904.1  hypothetical protein (DUF626) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_973904.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    B3H657, Q2V4L6, Q3E7C4, Q94K54, Q9LR97
    UniProtKB/TrEMBL
    A0A178WGU8, A0A654EDB4
    Conserved Domains (1) summary
    cl19902
    Location:18 → 344
    protein_MS5; Protein MS5

  2. NM_001084122.1 → NP_001077591.1  hypothetical protein (DUF626) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001077591.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654EDB4
    Conserved Domains (1) summary
    cl19902
    Location:18 → 314
    DUF626; Protein of unknown function (DUF626)

  3. NM_102242.3 → NP_564210.2  hypothetical protein (DUF626) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564210.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LR97
    Conserved Domains (1) summary
    cl19902
    Location:18 → 259
    DUF626; Protein of unknown function (DUF626)

  4. NM_202176.2 → NP_973905.1  hypothetical protein (DUF626) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_973905.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654EDB4
    Conserved Domains (1) summary
    cl19902
    Location:18 → 339
    DUF626; Protein of unknown function (DUF626)

  5. NM_001036008.2 → NP_001031085.2  hypothetical protein (DUF626) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031085.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LR97
    Conserved Domains (1) summary
    cl19902
    Location:18 → 236
    DUF626; Protein of unknown function (DUF626)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LR97.1

Gene LinkOut

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