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NHL domain-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838999, updated on 18-Sep-2024

Summary

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Official Full Name
NHL domain-containing protein
Primary source
TAIR:AT1G23880
Locus tag
AT1G23880
See related
Araport:AT1G23880
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T23E23.5; T23E23_5
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Genomic context

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Location:
chromosome: 1
Exon count:
7
Sequence:
Chromosome: 1; NC_003070.9 (8435657..8438811)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene RS-containing zinc finger protein 21 Neighboring gene trehalose-phosphatase/synthase 9 Neighboring gene NHL domain-containing protein Neighboring gene gamma-adaptin 1 Neighboring gene Polyketide cyclase/dehydrase and lipid transport superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_001332623.1
NM_102236.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in plasmodesma HDA PubMed 

General protein information

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Preferred Names
NHL domain-containing protein
NP_173800.2
  • NHL domain-containing protein; CONTAINS InterPro DOMAIN/s: NHL repeat (InterPro:IPR001258), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: NHL domain-containing protein (TAIR:AT1G70280.2); Has 2830 Blast hits to 1270 proteins in 217 species: Archae - 77; Bacteria - 1235; Metazoa - 81; Fungi - 0; Plants - 196; Viruses - 0; Other Eukaryotes - 1241 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    8435657..8438811
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_102236.3 → NP_173800.2  NHL domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_173800.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9VTZ5, A0A654ENA6, Q8S9K1
    Conserved Domains (2) summary
    cd05819
    Location:147 → 189
    NHL; NHL repeat [structural motif]
    cl18310
    Location:147 → 288
    NHL; NHL repeat unit of beta-propeller proteins

  2. NM_001332623.1 → NP_001321768.1  NHL domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8ARX0, A0A5S9VTZ5, A0A654ENA6
Nucleotide Protein
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