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JP630 BURP domain-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838987, updated on 18-Sep-2024

Summary

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Official Symbol
JP630
Official Full Name
BURP domain-containing protein
Primary source
TAIR:AT1G23760
Locus tag
AT1G23760
See related
Araport:AT1G23760
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F5O8.31; F5O8_31; PG3; POLYGALACTURONASE 3
Summary
Encodes aromatic rich glycoprotein JP630.
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Genomic context

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See JP630 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
2
Sequence:
Chromosome: 1; NC_003070.9 (8401808..8404301)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene beta carbonic anhydrase 3 Neighboring gene Oxidoreductase, zinc-binding dehydrogenase family protein Neighboring gene Nucleic acid-binding, OB-fold-like protein Neighboring gene F-box family protein Neighboring gene F-box family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_102224.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
BURP domain-containing protein
NP_173788.1
  • JP630; CONTAINS InterPro DOMAIN/s: BURP (InterPro:IPR004873); BEST Arabidopsis thaliana protein match is: polygalacturonase 2 (TAIR:AT1G70370.2); Has 1783 Blast hits to 1423 proteins in 248 species: Archae - 0; Bacteria - 362; Metazoa - 287; Fungi - 197; Plants - 556; Viruses - 4; Other Eukaryotes - 377 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    8401808..8404301
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_102224.4 → NP_173788.1  BURP domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_173788.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P92982, Q9S9K5
    UniProtKB/TrEMBL
    Q0WSP6
    Conserved Domains (1) summary
    smart01045
    Location:405 → 621
    BURP; The BURP domain is found at the C-terminus of several different plant proteins
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P92982.2

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