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hypothetical protein (DUF220) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838978, updated on 18-Sep-2024

Summary

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Official Full Name
hypothetical protein (DUF220)
Primary source
TAIR:AT1G23680
Locus tag
AT1G23680
See related
Araport:AT1G23680
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F5O8.23; F5O8_23
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Genomic context

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Location:
chromosome: 1
Exon count:
3
Sequence:
Chromosome: 1; NC_003070.9 (8376687..8377156, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene hypothetical protein (Domain of unknown function DUF220) Neighboring gene OBP32pep protein, putative (DUF220) Neighboring gene hypothetical protein (Domain of unknown function DUF220) Neighboring gene Protein kinase superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
hypothetical protein (DUF220)
NP_173780.1
  • Domain of unknown function (DUF220); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein match is: Domain of unknown function DUF220 (TAIR:AT1G23600.2); Has 82 Blast hits to 71 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    8376687..8377156 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_102216.1 → NP_173780.1  hypothetical protein (DUF220) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_173780.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654EN85, Q9ZUC7
    Conserved Domains (1) summary
    pfam02713
    Location:8 → 50
    DUF220; Domain of unknown function DUF220
Nucleotide Protein
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