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OBP32pep protein, putative (Domain of unknown function DUF220) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838970, updated on 18-Sep-2024

Summary

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Official Full Name
OBP32pep protein, putative (Domain of unknown function DUF220)
Primary source
TAIR:AT1G23600
Locus tag
AT1G23600
See related
Araport:AT1G23600
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F28C11.31
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Genomic context

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Location:
chromosome: 1
Exon count:
5
Sequence:
Chromosome: 1; NC_003070.9 (8360978..8362485, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene transmembrane protein, putative (Domain of unknown function DUF220) Neighboring gene OBP32pep protein, putative (Domain of unknown function DUF220) Neighboring gene uncharacterized protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001084120.2
NM_102209.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
OBP32pep protein, putative (Domain of unknown function DUF220)
NP_001077589.1
  • Domain of unknown function DUF220; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: petal, leaf whorl, sepal, flower, carpel; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF220) (TAIR:AT1G23570.2); Has 139 Blast hits to 124 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 139; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
NP_173773.1
  • Domain of unknown function DUF220; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein match is: Domain of unknown function DUF220 (TAIR:AT1G23690.1); Has 147 Blast hits to 132 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 147; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    8360978..8362485 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_102209.4 → NP_173773.1  OBP32pep protein, putative (Domain of unknown function DUF220) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_173773.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W271, A0A5S9VNY1, A0A654ECC7, Q9ZUD4
    Conserved Domains (1) summary
    pfam02713
    Location:148 → 220
    DUF220; Domain of unknown function DUF220

  2. NM_001084120.2 → NP_001077589.1  OBP32pep protein, putative (Domain of unknown function DUF220) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001077589.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W271, Q45GN9
    Conserved Domains (1) summary
    pfam02713
    Location:102 → 174
    DUF220; Domain of unknown function DUF220
Nucleotide Protein
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