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Zinc finger (CCCH-type/C3HC4-type RING finger) family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838964, updated on 18-Sep-2024

Summary

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Official Full Name
Zinc finger (CCCH-type/C3HC4-type RING finger) family protein
Primary source
TAIR:AT1G01350
Locus tag
AT1G01350
See related
Araport:AT1G01350
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F6F3.14; F6F3.15; F6F3_14; F6F3_15
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Genomic context

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Location:
chromosome: 1
Exon count:
4
Sequence:
Chromosome: 1; NC_003070.9 (136090..138162)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene auxin-responsive endogenous peptide protein Neighboring gene cyclic nucleotide gated channel 10 Neighboring gene Putative endonuclease or glycosyl hydrolase Neighboring gene regulatory component of ABA receptor 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_100017.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Zinc finger (CCCH-type/C3HC4-type RING finger) family protein
NP_171642.2
  • Zinc finger (CCCH-type/C3HC4-type RING finger) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: Zinc finger (CCCH-type/C3HC4-type RING finger) family protein (TAIR:AT5G06420.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    136090..138162
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_100017.3 → NP_171642.2  Zinc finger (CCCH-type/C3HC4-type RING finger) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_171642.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8GX84, Q9LNI9
    UniProtKB/TrEMBL
    A0A5S9S1F8, C0SUR6
    Conserved Domains (1) summary
    COG5152
    Location:193 → 337
    COG5152; Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8GX84.2

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