hypothetical protein (DUF220) [Arabidopsis thaliana (thale cress)] - Gene

Summary

Go to the top of the page Help

Official Full Name: hypothetical protein (DUF220)
Primary source: TAIR:AT1G23520
Locus tag: AT1G23520
See related: Araport:AT1G23520
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: F28C11.15
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help

See in Genome Data Viewer

Location:: chromosome: 1

Exon count:: 4

Sequence:: Chromosome: 1; NC_003070.9 (8343424..8344839, complement)

Chromosome 1 - NC_003070.9 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:: NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

NM_001198143.1

Supported by ESTs:

NM_001332606.1

Supported by ESTs:

NM_102201.2

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
involved_in biological_process	ND No biological Data available more info

Component	Evidence Code	Pubs
located_in nucleus	ISM Inferred from Sequence Model more info

General protein information

Go to the top of the page Help

Preferred Names: hypothetical protein (DUF220)

NP_001185072.1

Domain of unknown function (DUF220); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: petal, leaf whorl, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23510.1).

NP_173766.1

Domain of unknown function (DUF220); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein match is: Domain of unknown function DUF220 (TAIR:AT1G23600.1); Has 145 Blast hits to 132 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 145; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003070.9 Reference assembly

Range

8343424..8344839 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_001332607.1 → NP_001323392.1 hypothetical protein (DUF220) [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1P8AX24, A0A7G2DVN1
NM_001198143.1 → NP_001185072.1 hypothetical protein (DUF220) [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_001185072.1

Status: REVIEWED

UniProtKB/TrEMBL

F4I682
NM_102201.2 → NP_173766.1 hypothetical protein (DUF220) [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_173766.1

Status: REVIEWED

UniProtKB/TrEMBL

A0A654EDG6, Q9ZUE2

Conserved Domains (1) summary

pfam02713
Location:144 → 216

DUF220; Domain of unknown function DUF220
NM_001332606.1 → NP_001323393.1 hypothetical protein (DUF220) [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1P8AWW3