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mediator of RNA polymerase II transcription subunit [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838932, updated on 18-Sep-2024

Summary

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Official Full Name
mediator of RNA polymerase II transcription subunit
Primary source
TAIR:AT1G23230
Locus tag
AT1G23230
See related
Araport:AT1G23230
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F26F24.8; F26F24_8
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Genomic context

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Location:
chromosome: 1
Exon count:
20
Sequence:
Chromosome: 1; NC_003070.9 (8244418..8251937)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene glycosyl hydrolase 9B6 Neighboring gene Dynein light chain type 1 family protein Neighboring gene Caleosin-related family protein Neighboring gene Caleosin-related family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Purification of a plant mediator from Arabidopsis thaliana identifies PFT1 as the Med25 subunit. Bäckström S, et al. Mol Cell, 2007 Jun 8. PMID 17560376
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_102172.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
part_of mediator complex IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
mediator of RNA polymerase II transcription subunit
NP_001185071.1
  • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med23 (InterPro:IPR021629).
NP_173737.1
  • CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med23 (InterPro:IPR021629); Has 187 Blast hits to 184 proteins in 67 species: Archae - 0; Bacteria - 0; Metazoa - 135; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    8244418..8251937
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001332594.1 → NP_001322591.1  mediator of RNA polymerase II transcription subunit [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W8I0, A0A1P8AUG4, A0A654EE90
    Conserved Domains (1) summary
    pfam11573
    Location:677 → 1296
    Med23; Mediator complex subunit 23

  2. NM_001198142.2 → NP_001185071.1  mediator of RNA polymerase II transcription subunit [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001185071.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W6J7
    Conserved Domains (1) summary
    pfam11573
    Location:676 → 1292
    Med23; Mediator complex subunit 23

  3. NM_102172.2 → NP_173737.1  mediator of RNA polymerase II transcription subunit [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_173737.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4I4P3, F4I4P4, O49295, Q9LR38
    UniProtKB/TrEMBL
    A0A178W8I0
    Conserved Domains (1) summary
    pfam11573
    Location:695 → 1315
    Med23; Mediator complex subunit 23
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
F4I4P3.1

Gene LinkOut

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