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transmembrane protein (Protein of unknown function DUF2359, transmembrane) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838925, updated on 18-Sep-2024

Summary

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Official Full Name
transmembrane protein (Protein of unknown function DUF2359, transmembrane)
Primary source
TAIR:AT1G23170
Locus tag
AT1G23170
See related
Araport:AT1G23170
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T26J12.6; T26J12_6
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Genomic context

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Location:
chromosome: 1
Exon count:
10
Sequence:
Chromosome: 1; NC_003070.9 (8212556..8215807)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Auxin-responsive GH3 family protein Neighboring gene ARM repeat superfamily protein Neighboring gene Phosphoglucomutase/phosphomannomutase family protein Neighboring gene Plant invertase/pectin methylesterase inhibitor superfamily

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Novel Aquaporin Regulatory Mechanisms Revealed by Interactomics. Bellati J, et al. Mol Cell Proteomics, 2016 Nov. PMID 27609422, Free PMC Article
  2. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
  3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_102165.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in plasma membrane HDA PubMed 

General protein information

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Preferred Names
transmembrane protein (Protein of unknown function DUF2359, transmembrane)
NP_001185070.1
  • Protein of unknown function DUF2359, transmembrane; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2359, transmembrane (InterPro:IPR019308); BEST Arabidopsis thaliana protein match is: Protein of unknown function DUF2359, transmembrane (TAIR:AT1G70770.2).
NP_173730.1
  • Protein of unknown function DUF2359, transmembrane; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2359, transmembrane (InterPro:IPR019308); BEST Arabidopsis thaliana protein match is: Protein of unknown function DUF2359, transmembrane (TAIR:AT1G70770.2); Has 178 Blast hits to 160 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 70; Fungi - 0; Plants - 108; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    8212556..8215807
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001198141.1 → NP_001185070.1  transmembrane protein (Protein of unknown function DUF2359, transmembrane) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001185070.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WND7, A0A5S9VLS0, A0A654EDW3, F4I4N4
    Conserved Domains (1) summary
    pfam10151
    Location:287 → 560
    TMEM214; C-terminal, caspase 4 activator

  2. NM_102165.1 → NP_173730.1  transmembrane protein (Protein of unknown function DUF2359, transmembrane) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_173730.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WND7, A0A5S9VLS0, F4I4N5
    Conserved Domains (1) summary
    pfam10151
    Location:242 → 515
    DUF2359; uncharacterized conserved protein (DUF2359)
Nucleotide Protein
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