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Tetratricopeptide repeat (TPR)-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838888, updated on 18-Sep-2024

Summary

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Official Full Name
Tetratricopeptide repeat (TPR)-like superfamily protein
Primary source
TAIR:AT1G22830
Locus tag
AT1G22830
See related
Araport:AT1G22830
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 1
Exon count:
2
Sequence:
Chromosome: 1; NC_003070.9 (8075996..8079137)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Low affinity potassium transport system protein Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Neighboring gene ncRNA Neighboring gene Integrase-type DNA-binding superfamily protein Neighboring gene ncRNA Neighboring gene CYTOCHROME C-1 Neighboring gene SNARE associated Golgi protein family Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_001084113.2
NM_102129.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in RNA modification IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Tetratricopeptide repeat (TPR)-like superfamily protein
NP_001077582.1
  • Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G71490.1); Has 41595 Blast hits to 13372 proteins in 196 species: Archae - 1; Bacteria - 4; Metazoa - 55; Fungi - 60; Plants - 41015; Viruses - 0; Other Eukaryotes - 460 (source: NCBI BLink).
NP_173696.1
  • Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G71490.1); Has 41595 Blast hits to 13372 proteins in 196 species: Archae - 1; Bacteria - 4; Metazoa - 55; Fungi - 60; Plants - 41015; Viruses - 0; Other Eukaryotes - 460 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    8075996..8079137
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_102129.3 → NP_173696.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_173696.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O23139, O80541, Q4V389, Q67YS4
    UniProtKB/TrEMBL
    A0A178WAW4, A0A5S9VME7
    Conserved Domains (2) summary
    PLN03077
    Location:34 → 659
    PLN03077; Protein ECB2; Provisional
    sd00004
    Location:492 → 519
    PPR; PPR repeat [structural motif]

  2. NM_001084113.2 → NP_001077582.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001077582.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O23139, O80541, Q4V389, Q67YS4
    UniProtKB/TrEMBL
    A0A178WAW4, A0A5S9VME7
    Conserved Domains (2) summary
    PLN03077
    Location:34 → 659
    PLN03077; Protein ECB2; Provisional
    sd00004
    Location:492 → 519
    PPR; PPR repeat [structural motif]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q4V389.1

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