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PFL Ribosomal protein S13/S18 family [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838884, updated on 18-Sep-2024

Summary

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Official Symbol
PFL
Official Full Name
Ribosomal protein S13/S18 family
Primary source
TAIR:AT1G22780
Locus tag
AT1G22780
See related
Araport:AT1G22780
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
40S RIBOSOMAL PROTEIN S18; PFL1; POINTED FIRST LEAVES; POINTED FIRST LEAVES 1; RPS18A; T22J18.5; T22J18_5
Summary
S18 ribosomal protein involved in the binding of f-Met tRNA during initiation of mRNA translation. Expression restricted to meristems. Mutant phenotype-pointed first leaves,reduced fresh weight, growth retardation.
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Genomic context

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See PFL in Genome Data Viewer
Location:
chromosome: 1
Exon count:
4
Sequence:
Chromosome: 1; NC_003070.9 (8067864..8069356)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene poly(A) binding protein 3 Neighboring gene gigantea protein (GI) Neighboring gene Low affinity potassium transport system protein Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Neighboring gene ncRNA Neighboring gene Integrase-type DNA-binding superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. An S18 ribosomal protein gene copy at the Arabidopsis PFL locus affects plant development by its specific expression in meristems. Van Lijsebettens M, et al. EMBO J, 1994 Jul 15. PMID 7913892, Free PMC Article
  2. Identification and dynamics of Arabidopsis adaptor protein-2 complex and its involvement in floral organ development. Yamaoka S, et al. Plant Cell, 2013 Aug. PMID 23975897, Free PMC Article
  3. Interactomics of Qa-SNARE in Arabidopsis thaliana. Fujiwara M, et al. Plant Cell Physiol, 2014 Apr. PMID 24556609
  4. Analysis of the Arabidopsis cytosolic ribosome proteome provides detailed insights into its components and their post-translational modification. Carroll AJ, et al. Mol Cell Proteomics, 2008 Feb. PMID 17934214
  5. Arabidopsis cell wall proteome defined using multidimensional protein identification technology. Bayer EM, et al. Proteomics, 2006 Jan. PMID 16287169

See all (14) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_102125.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables mRNA binding HDA PubMed 
enables mRNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within translational initiation TAS
Traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
NOT located_in Golgi apparatus RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
part_of cytosolic small ribosomal subunit HDA PubMed 
located_in nucleus HDA PubMed 
located_in plant-type cell wall HDA PubMed 
located_in plant-type vacuole HDA PubMed 
located_in plasmodesma HDA PubMed 

General protein information

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Preferred Names
Ribosomal protein S13/S18 family
NP_173692.1
  • POINTED FIRST LEAVES (PFL); FUNCTIONS IN: structural constituent of ribosome, RNA binding, nucleic acid binding; INVOLVED IN: translational initiation, translation; LOCATED IN: cytosolic small ribosomal subunit, ribosome, small ribosomal subunit, cell wall, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S13-like, H2TH (InterPro:IPR010979), Ribosomal protein S13, conserved site (InterPro:IPR018269), Ribosomal protein S13 (InterPro:IPR001892); BEST Arabidopsis thaliana protein match is: S18 ribosomal protein (TAIR:AT4G09800.1); Has 7956 Blast hits to 7953 proteins in 2911 species: Archae - 236; Bacteria - 5065; Metazoa - 352; Fungi - 176; Plants - 401; Viruses - 0; Other Eukaryotes - 1726 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    8067864..8069356
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_102125.4 → NP_173692.1  Ribosomal protein S13/S18 family [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_173692.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P34788, Q94K22
    UniProtKB/TrEMBL
    A0A178W302, A0A178W7P8, A0A384KT69, Q5PNZ9
    Conserved Domains (1) summary
    PTZ00134
    Location:1 → 152
    PTZ00134; 40S ribosomal protein S18; Provisional
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P34788.1

Gene LinkOut

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