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E3 ubiquitin-protein ligase RNF170-like protein (DUF 1232) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838857, updated on 18-Sep-2024

Summary

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Official Full Name
E3 ubiquitin-protein ligase RNF170-like protein (DUF 1232)
Primary source
TAIR:AT1G22510
Locus tag
AT1G22510
See related
Araport:AT1G22510
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F12K8.14; F12K8_14
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Genomic context

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Location:
chromosome: 1
Exon count:
5
Sequence:
Chromosome: 1; NC_003070.9 (7950818..7952832, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene basic helix-loop-helix (bHLH) DNA-binding superfamily protein Neighboring gene ncRNA Neighboring gene RING/U-box superfamily protein Neighboring gene ncRNA Neighboring gene MICOS complex subunit Mic10-like protein (DUF543) Neighboring gene PATELLIN 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A proteomics dissection of Arabidopsis thaliana vacuoles isolated from cell culture. Jaquinod M, et al. Mol Cell Proteomics, 2007 Mar. PMID 17151019, Free PMC Article
  2. A high content in lipid-modified peripheral proteins and integral receptor kinases features in the arabidopsis plasma membrane proteome. Marmagne A, et al. Mol Cell Proteomics, 2007 Nov. PMID 17644812
  3. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
  4. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
  5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_001198135.1
NM_102100.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in endoplasmic reticulum HDA PubMed 
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  
located_in nucleus HDA PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in plant-type vacuole HDA PubMed 
located_in plasma membrane HDA PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase RNF170-like protein (DUF 1232)
NP_001185064.1
  • RING/U-box protein with domain of unknown function (DUF 1232); FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1232 (InterPro:IPR010652); BEST Arabidopsis thaliana protein match is: RING/U-box protein with domain of unknown function (DUF 1232) (TAIR:AT1G72175.1).
NP_564172.1
  • FUNCTIONS IN: zinc ion binding; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1232 (InterPro:IPR010652), Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box protein with domain of unknown function (DUF 1232) (TAIR:AT1G72175.1); Has 639 Blast hits to 639 proteins in 126 species: Archae - 0; Bacteria - 17; Metazoa - 440; Fungi - 43; Plants - 76; Viruses - 2; Other Eukaryotes - 61 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    7950818..7952832 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001198135.1 → NP_001185064.1  E3 ubiquitin-protein ligase RNF170-like protein (DUF 1232) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001185064.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9VJ88, A0A654EDP7, F4I1E4
    Conserved Domains (1) summary
    cl17238
    Location:49 → 71
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

  2. NM_102100.3 → NP_564172.1  E3 ubiquitin-protein ligase RNF170-like protein (DUF 1232) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564172.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W3X0, Q0WWX8, Q8LDL6
    Conserved Domains (1) summary
    cd00162
    Location:10 → 56
    RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
Nucleotide Protein
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