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GroES-like zinc-binding dehydrogenase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838849, updated on 18-Sep-2024

Summary

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Official Full Name
GroES-like zinc-binding dehydrogenase family protein
Primary source
TAIR:AT1G22430
Locus tag
AT1G22430
See related
Araport:AT1G22430
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F12K8.22; F12K8_22
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Genomic context

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Location:
chromosome: 1
Exon count:
7
Sequence:
Chromosome: 1; NC_003070.9 (7919077..7921893)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Class-II DAHP synthetase family protein Neighboring gene hydroxyproline-rich glycoprotein family protein Neighboring gene Zinc-binding alcohol dehydrogenase family protein Neighboring gene cytochrome C oxidase 6B Neighboring gene O-fucosyltransferase family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis G-protein interactome reveals connections to cell wall carbohydrates and morphogenesis. Klopffleisch K, et al. Mol Syst Biol, 2011 Sep 27. PMID 21952135, Free PMC Article
  2. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
  3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001036002.1
NM_102092.6

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables alcohol dehydrogenase (NAD+) activity IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in nucleus HDA PubMed 

General protein information

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Preferred Names
GroES-like zinc-binding dehydrogenase family protein
NP_001031079.1
  • GroES-like zinc-binding dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, zinc ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-containing, conserved site (InterPro:IPR002328), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: GroES-like zinc-binding dehydrogenase family protein (TAIR:AT4G22110.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_173659.1
  • GroES-like zinc-binding dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, zinc ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-containing, conserved site (InterPro:IPR002328), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: GroES-like zinc-binding dehydrogenase family protein (TAIR:AT4G22110.2); Has 33980 Blast hits to 33961 proteins in 3177 species: Archae - 763; Bacteria - 21520; Metazoa - 1242; Fungi - 2509; Plants - 4182; Viruses - 3; Other Eukaryotes - 3761 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    7919077..7921893
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001332547.1 → NP_001321091.1  GroES-like zinc-binding dehydrogenase family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8APY5

  2. NM_001332548.1 → NP_001321090.1  GroES-like zinc-binding dehydrogenase family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WKH4, A0A1P8APV8
    Conserved Domains (1) summary
    cl16912
    Location:14 → 265
    MDR; Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

  3. NM_001332549.1 → NP_001321089.1  GroES-like zinc-binding dehydrogenase family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WKH4, A0A1P8APV8
    Conserved Domains (1) summary
    cl16912
    Location:14 → 265
    MDR; Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

  4. NM_102092.6 → NP_173659.1  GroES-like zinc-binding dehydrogenase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_173659.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SK86
    UniProtKB/TrEMBL
    A0A178WJG9, A0A5S9VKZ4, A0A7G2DVD0
    Conserved Domains (1) summary
    cd08301
    Location:14 → 385
    alcohol_DH_plants; Plant alcohol dehydrogenase

  5. NM_001036002.1 → NP_001031079.1  GroES-like zinc-binding dehydrogenase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031079.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SK86
    UniProtKB/TrEMBL
    A0A178WJG9, A0A5S9VKZ4, A0A7G2DVD0
    Conserved Domains (1) summary
    cd08301
    Location:14 → 385
    alcohol_DH_plants; Plant alcohol dehydrogenase
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SK86.1

Gene LinkOut

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