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Endoplasmic reticulum vesicle transporter protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838825, updated on 18-Sep-2024

Summary

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Official Full Name
Endoplasmic reticulum vesicle transporter protein
Primary source
TAIR:AT1G22200
Locus tag
AT1G22200
See related
Araport:AT1G22200
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F16L1.7; F16L1_7
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Genomic context

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Location:
chromosome: 1
Exon count:
13
Sequence:
Chromosome: 1; NC_003070.9 (7837563..7840898, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Sec14p-like phosphatidylinositol transfer family protein Neighboring gene ncRNA Neighboring gene Integrase-type DNA-binding superfamily protein Neighboring gene Haloacid dehalogenase-like hydrolase (HAD) superfamily protein Neighboring gene F-box family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Mapping the Arabidopsis organelle proteome. Dunkley TP, et al. Proc Natl Acad Sci U S A, 2006 Apr 25. PMID 16618929, Free PMC Article
  2. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
  3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001036000.1
NM_102070.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in endoplasmic reticulum HDA PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Endoplasmic reticulum vesicle transporter protein
NP_001031077.1
  • Endoplasmic reticulum vesicle transporter protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1692 (InterPro:IPR012936); BEST Arabidopsis thaliana protein match is: Endoplasmic reticulum vesicle transporter protein (TAIR:AT1G36050.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_564162.1
  • Endoplasmic reticulum vesicle transporter protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1692 (InterPro:IPR012936); BEST Arabidopsis thaliana protein match is: Endoplasmic reticulum vesicle transporter protein (TAIR:AT1G36050.2); Has 1257 Blast hits to 1087 proteins in 204 species: Archae - 0; Bacteria - 0; Metazoa - 432; Fungi - 284; Plants - 278; Viruses - 0; Other Eukaryotes - 263 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    7837563..7840898 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_102070.4 → NP_564162.1  Endoplasmic reticulum vesicle transporter protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564162.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WAG4, A0A7G2DSC9, Q9LM16
    Conserved Domains (2) summary
    pfam07970
    Location:149 → 366
    COPIIcoated_ERV; Endoplasmic reticulum vesicle transporter
    pfam13850
    Location:8 → 98
    ERGIC_N; Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)

  2. NM_001036000.1 → NP_001031077.1  Endoplasmic reticulum vesicle transporter protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031077.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2DSC9, F4I1A5
    Conserved Domains (2) summary
    pfam07970
    Location:149 → 335
    COPIIcoated_ERV; Endoplasmic reticulum vesicle transporter
    pfam13850
    Location:8 → 98
    ERGIC_N; Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)
Nucleotide Protein
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