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LYM1 lysm domain GPI-anchored protein 1 precursor [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838790, updated on 18-Sep-2024

Summary

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Official Symbol
LYM1
Official Full Name
lysm domain GPI-anchored protein 1 precursor
Primary source
TAIR:AT1G21880
Locus tag
AT1G21880
See related
Araport:AT1G21880
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
LYP2; lysm domain GPI-anchored protein 1 precursor; LysM-containing receptor protein 2; T26F17.10; T26F17_10
Summary
Encodes a lysin-motif protein mediating bacterial peptidoglycan sensing and immunity to bacterial infection. Induction of chitin-responsive genes by chitin treatment is not blocked in the mutant.
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Genomic context

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See LYM1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
5
Sequence:
Chromosome: 1; NC_003070.9 (7680390..7682641)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Plant thionin family protein Neighboring gene golgi nucleotide sugar transporter 5 Neighboring gene ncRNA Neighboring gene nodulin MtN21 /EamA-like transporter family protein Neighboring gene emp24/gp25L/p24 family/GOLD family protein Neighboring gene Integrase-type DNA-binding superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis lysin-motif proteins LYM1 LYM3 CERK1 mediate bacterial peptidoglycan sensing and immunity to bacterial infection. Willmann R, et al. Proc Natl Acad Sci U S A, 2011 Dec 6. PMID 22106285, Free PMC Article
  2. Identification of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A proteomic and genomic analysis. Borner GH, et al. Plant Physiol, 2003 Jun. PMID 12805588, Free PMC Article
  3. Prediction of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A genomic analysis. Borner GH, et al. Plant Physiol, 2002 Jun. PMID 12068095, Free PMC Article
  4. A high content in lipid-modified peripheral proteins and integral receptor kinases features in the arabidopsis plasma membrane proteome. Marmagne A, et al. Mol Cell Proteomics, 2007 Nov. PMID 17644812
  5. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_102036.4
NM_179366.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables peptidoglycan binding IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within immune response IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  
located_in membrane TAS
Traceable Author Statement
more info
 PubMed 
located_in nucleus HDA PubMed 
located_in plasma membrane HDA PubMed 
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
lysm domain GPI-anchored protein 1 precursor
NP_564153.1
  • lysm domain GPI-anchored protein 1 precursor (LYM1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cell wall macromolecule catabolic process; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidoglycan-binding lysin domain (InterPro:IPR018392), Peptidoglycan-binding Lysin subgroup (InterPro:IPR002482); BEST Arabidopsis thaliana protein match is: Peptidoglycan-binding LysM domain-containing protein (TAIR:AT1G77630.1); Has 660 Blast hits to 639 proteins in 131 species: Archae - 0; Bacteria - 238; Metazoa - 0; Fungi - 1; Plants - 404; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
NP_849697.1
  • lysm domain GPI-anchored protein 1 precursor (LYM1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cell wall macromolecule catabolic process; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidoglycan-binding lysin domain (InterPro:IPR018392), Peptidoglycan-binding Lysin subgroup (InterPro:IPR002482); BEST Arabidopsis thaliana protein match is: Peptidoglycan-binding LysM domain-containing protein (TAIR:AT1G77630.1); Has 655 Blast hits to 634 proteins in 130 species: Archae - 0; Bacteria - 234; Metazoa - 0; Fungi - 1; Plants - 403; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    7680390..7682641
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_102036.4 → NP_564153.1  lysm domain GPI-anchored protein 1 precursor [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_564153.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q5XF34, Q93ZH0, Q9SFE8
    UniProtKB/TrEMBL
    A0A178W9K9, A0A5S9VID9
    Conserved Domains (2) summary
    PRK10783
    Location:109 → 217
    mltD; membrane-bound lytic murein transglycosylase D; Provisional
    pfam01476
    Location:178 → 220
    LysM; LysM domain

  2. NM_179366.1 → NP_849697.1  lysm domain GPI-anchored protein 1 precursor [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_849697.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q93ZH0
    Conserved Domains (1) summary
    pfam01476
    Location:178 → 220
    LysM; LysM domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q93ZH0.1

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