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emb2170 embryo defective 2170 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838738, updated on 18-Sep-2024

Summary

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Official Symbol
emb2170
Official Full Name
embryo defective 2170
Primary source
TAIR:AT1G21390
Locus tag
AT1G21390
See related
Araport:AT1G21390
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
embryo defective 2170; F24J8.30; F24J8_30
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Genomic context

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See emb2170 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
2
Sequence:
Chromosome: 1; NC_003070.9 (7489046..7490803, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene glycolipid transfer protein 2 Neighboring gene uncharacterized protein Neighboring gene Target of Myb protein 1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_101991.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within embryo development ending in seed dormancy NAS
Non-traceable Author Statement
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
embryo defective 2170
NP_173561.2
  • embryo defective 2170 (emb2170); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G76980.2); Has 51 Blast hits to 51 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    7489046..7490803 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_101991.3 → NP_173561.2  embryo defective 2170 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_173561.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W1S8, A0A5S9VH41, A0A654EMK9, Q52K83
Nucleotide Protein
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