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uncharacterized protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838736, updated on 18-Sep-2024

Summary

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Official Full Name
uncharacterized protein
Primary source
TAIR:AT1G21370
Locus tag
AT1G21370
See related
Araport:AT1G21370
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F24J8.26; F24J8_26
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Genomic context

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Location:
chromosome: 1
Exon count:
4
Sequence:
Chromosome: 1; NC_003070.9 (7483781..7485666)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Thioredoxin superfamily protein Neighboring gene glycolipid transfer protein 2 Neighboring gene Target of Myb protein 1 Neighboring gene embryo defective 2170 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Separating Golgi Proteins from Cis to Trans Reveals Underlying Properties of Cisternal Localization. Parsons HT, et al. Plant Cell, 2019 Sep. PMID 31266899, Free PMC Article
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_101989.5
NM_202148.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in Golgi trans cisterna HDA PubMed 

General protein information

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Preferred Names
uncharacterized protein
NP_173559.1
  • unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF218 (InterPro:IPR003848); Has 160 Blast hits to 160 proteins in 86 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 102; Plants - 44; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
NP_973877.1
  • unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF218 (InterPro:IPR003848); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    7483781..7485666
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_202148.2 → NP_973877.1  uncharacterized protein AT1G21370 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_973877.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WB41, F4HXZ8, Q84W62
    Conserved Domains (1) summary
    cl00630
    Location:142 → 256
    YdcF-like; YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The ...

  2. NM_101989.5 → NP_173559.1  uncharacterized protein AT1G21370 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_173559.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WB41, F4HXZ8, Q84W62
    Conserved Domains (1) summary
    cl00630
    Location:142 → 256
    YdcF-like; YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The ...
Nucleotide Protein
Heading Accession and Version

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