U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

nucleic acid/nucleotide binding protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838729, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Full Name
nucleic acid/nucleotide binding protein
Primary source
TAIR:AT1G21320
Locus tag
AT1G21320
See related
Araport:AT1G21320
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F16F4.3; F16F4_3
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 1
Exon count:
8
Sequence:
Chromosome: 1; NC_003070.9 (7462327..7466164, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene extensin 3 Neighboring gene ncRNA Neighboring gene dual specificity kinase Neighboring gene VQ motif-containing protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Structural and functional analysis of VQ motif-containing proteins in Arabidopsis as interacting proteins of WRKY transcription factors. Cheng Y, et al. Plant Physiol, 2012 Jun. PMID 22535423, Free PMC Article
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help
NM_001160882.2
NM_001332492.1
NM_001332493.1
NM_001332494.1
NM_101984.4

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
nucleic acid/nucleotide binding protein
NP_001154354.1
  • nucleotide binding;nucleic acid binding; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G76940.1); Has 568 Blast hits to 568 proteins in 134 species: Archae - 0; Bacteria - 0; Metazoa - 270; Fungi - 126; Plants - 140; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).
NP_173554.3
  • nucleotide binding;nucleic acid binding; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower, cultured cell; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT1G21326.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    7462327..7466164 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_101984.4 → NP_173554.3  nucleic acid/nucleotide binding protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_173554.3

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4HWF8, F4HWF9, Q9LMP3
    UniProtKB/TrEMBL
    A0A5S9VEZ7
    Conserved Domains (2) summary
    pfam05678
    Location:65 → 88
    VQ; VQ motif
    cd21618
    Location:320 → 408
    RRM_AtNSRA_like; RNA recognition motif (RRM) found in Arabidopsis thaliana nuclear speckle RNA-binding protein A (AtNSRA) and similar protein

  2. NM_001332493.1 → NP_001320686.1  nucleic acid/nucleotide binding protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8ANM3, A0A5S9VEZ7

  3. NM_001332492.1 → NP_001320688.1  nucleic acid/nucleotide binding protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8ANM6

  4. NM_001160882.2 → NP_001154354.1  nucleic acid/nucleotide binding protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001154354.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4HWF9
    Conserved Domains (2) summary
    COG0724
    Location:141 → 226
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12420
    Location:155 → 237
    RRM_RBPMS_like; RNA recognition motif in RNA-binding protein with multiple splicing (RBP-MS)-like proteins

  5. NM_001332494.1 → NP_001320687.1  nucleic acid/nucleotide binding protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8ANN1
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
F4HWF9.1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.